Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003424

Physical Location & Seq

Genomic Coordinates Forward (+)

22231033 .. 22233046

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGAGATGTGATTGTTCGATAGCGCTCAAGAGCTCCGGAGAGATACTAGCTCCGATTTCAAGCTCTCTGTCGTCCTTGAATATCTTGAATGCTCGCCAGAACTGCAGTTCGCGGTATAAATGGGAGATGAAACCCCAGCGGGTGTCTTCACCCCTGAAACTCAAGAAGACGTCGAATTTCCAACGGGGAGGTGATTCATCCCAAGCAAGAGATGGGGAGGCTCGTGTGCAGGGATTTACTCTCCTTCAGTTGGCAATTCAAGGTGTGGACTCAAGGGAATGTTTCTGGAATTTCAAGATGCCAGACATTGCAGGAAGGGTCTGCATGCCCCCAGACAATCGGGTACACAGTAGTGTTTCCCTTCAAATTCATGGTATATGGCAGAGTACAATTGGGTACGGTCCCTATGCACCTCAGCTGCATTTGTCAAACTCAAAACCAGATGCTGAGAATGCATATGCTAGCTACCAAGCCCTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

161

Amino Acids

17.78

Weight (kDa)

9.22

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28910 AT2G28910 AT2G28910
fragaria_vesca	FvH4_3g36111 FvH4_3g36111
malus_domestica	MD03G1093300.v1.1 MD11G1107700.v1.1 MD11G1108100.v1.1
prunus_persica	Prupe.6G077300_v2.0.a1
pyrus_communis	pycom03g07480 pycom11g08930
rosa_chinensis	RchiOBHm_Chr5g0064541 RchiOBHm_Chr5g0064551 RchiOBHm_Chr5g0064811 RchiOBHm_Chr5g0064841
rosa_laevigata	RLG00000001342 RLG00000035732 RLG00000035734 RLG00000035736
rosa_roxburghii	Rroxscaffold_1G00016450 Rroxscaffold_1G00016480 Rroxscaffold_6G00399790 Rroxscaffold_6G00400120
rosa_rugosa	Rorug05G0366000 Rorug05G0366100 Rorug05G0366500
rosa_samantha	Rh3CG275300 Rh3DG272600 Rh5AG424000 Rh5BG439400 Rh5CG462000 Rh5CG462100 Rh5DG452700 Rh5DG452900
rosa_wichuraiana	Rw5G039860 Rw5G039880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	176
AccII	CGCG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	2 cut(s)	115, 142
AcsI	RAATTY	3 cut(s)	178, 292, 369
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	3 cut(s)	348, 391, 401
AfeI	AGCGCT	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	6 cut(s)	63, 82, 91, 263, 298, 368
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	5 cut(s)	36, 53, 66, 421, 468
AluI	AGCT	5 cut(s)	36, 53, 66, 421, 468
Alw21I	GWGCWC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	449
Aor13HI	TCCGGA	1 cut(s)	38
Aor51HI	AGCGCT	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	3 cut(s)	178, 292, 369
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	144, 206
AsuNHI	GCTAGC	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	141, 176
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	50, 465
BfmI	CTRYAG	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	406
BmsI	GCATC	2 cut(s)	291, 436
BmtI	GCTAGC	1 cut(s)	468
BpiI	GAAGAC	2 cut(s)	141, 176
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	3 cut(s)	14, 149, 259
BsaHI	GRCGYC	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	309
BseAI	TCCGGA	1 cut(s)	38
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	431, 441
BseXI	GCAGC	1 cut(s)	408
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	390
BsmI	GAATGC	2 cut(s)	97, 460
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	38
BspACI	CCGC	2 cut(s)	115, 142
BspCNI	CTCAG	2 cut(s)	430, 442
BspEI	TCCGGA	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	406
BspMAI	CTGCAG	1 cut(s)	110
BspOI	GCTAGC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	309
BssNI	GRCGYC	1 cut(s)	173
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	353, 404
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	97, 329, 466
BstDEI	CTNAG	2 cut(s)	417, 450
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 455
BstNSI	RCATGY	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	408
BstV2I	GAAGAC	2 cut(s)	141, 176
BtsCI	GGATG	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	97, 329, 466
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	3 cut(s)	347, 390, 400
CviAII	CATG	2 cut(s)	328, 374
CviJI	RGCY	7 cut(s)	36, 53, 66, 224, 421, 468, 476
CviKI_1	RGCY	7 cut(s)	36, 53, 66, 224, 421, 468, 476
CviQI	GTAC	3 cut(s)	347, 390, 400
DdeI	CTNAG	2 cut(s)	417, 450
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	404
Eco47III	AGCGCT	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	2 cut(s)	331, 377
FaiI	YATR	8 cut(s)	120, 329, 375, 380, 382, 411, 460, 462
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	2 cut(s)	327, 373
FauI	CCCGC	1 cut(s)	135
FauNDI	CATATG	1 cut(s)	460
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	2 cut(s)	50, 465
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	422
GsaI	CCCAGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	29
HapII	CCGG	1 cut(s)	39
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	331, 377
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	197, 272
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	144, 206
Hpy166II	GTNNAC	2 cut(s)	271, 349
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	6 cut(s)	31, 39, 88, 166, 289, 298
Hpy8I	GTNNAC	2 cut(s)	271, 349
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	3 cut(s)	257, 312, 374
HpyCH4III	ACNGT	2 cut(s)	353, 404
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	7 cut(s)	108, 232, 314, 327, 413, 424, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 455
HpyF3I	CTNAG	2 cut(s)	417, 450
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	331, 377
HspAI	GCGC	1 cut(s)	26
Kpn2I	TCCGGA	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	41, 58
Lsp1109I	GCAGC	1 cut(s)	408
LweI	GCATC	2 cut(s)	291, 436
MaeI	CTAG	2 cut(s)	50, 465
MaeII	ACGT	1 cut(s)	173
MboII	GAAGA	2 cut(s)	141, 181
MfeI	CAATTG	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	5 cut(s)	178, 258, 292, 369, 393
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	3 cut(s)	185, 214, 426
Mph1103I	ATGCAT	1 cut(s)	460
MroI	TCCGGA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	142, 421
MspI	CCGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	393
Mva1269I	GAATGC	2 cut(s)	97, 460
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	105, 455
NdeI	CATATG	1 cut(s)	460
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	2 cut(s)	331, 377
NlaIV	GGNNCC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	331
OliI	CACNNNNGTG	1 cut(s)	354
PaeI	GCATGC	1 cut(s)	331
PctI	GAATGC	2 cut(s)	97, 460
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	404
PstI	CTGCAG	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	449
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	3 cut(s)	348, 391, 401
RsaNI	GTAC	3 cut(s)	347, 390, 400
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	422
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	9 cut(s)	38, 55, 68, 176, 196, 268, 418, 423, 470
SfaNI	GCATC	2 cut(s)	291, 436
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	3 cut(s)	29, 164, 274
SmoI	CTYRAG	3 cut(s)	29, 164, 274
SphI	GCATGC	1 cut(s)	331
Sse9I	AATT	5 cut(s)	178, 258, 292, 369, 393
SsiI	CCGC	2 cut(s)	115, 142
SspMI	CTAG	2 cut(s)	50, 465
SstI	GAGCTC	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	353, 404
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	20, 176
TasI	AATT	5 cut(s)	178, 258, 292, 369, 393
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	146, 189, 362
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	3 cut(s)	178, 292, 369
XceI	RCATGY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	2 cut(s)	50, 465
ZraI	GACGTC	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.