Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003424

Physical Location & Seq

Genomic Coordinates Reverse (-)

48785878 .. 48786105

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0366100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGCCTAGCCCAGTGGGCTCCACCGCAGACCCGTCCGGCCCAAAACCAAGGAGCCGCTTCACCGATAACTCTTCCAGCGCCGAGCAATTTTCCAGCACGGTGTTCATTCCCTTGGCTCCGAAGGTGCACGATCCACAGGAGAGCTTCTTCAAACCTTGCAGTTCTTCGTGGACACCATCATGCCTGCGTCAGTCAACTCGCGGCACGGGCGGAGCTTCAGGTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

75

Amino Acids

7.83

Weight (kDa)

8.84

Isoelectric Point (pI)

67.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28910 AT2G28910 AT2G28910
fragaria_vesca	FvH4_3g36111 FvH4_3g36111
malus_domestica	MD03G1093300.v1.1 MD11G1107700.v1.1 MD11G1108100.v1.1
prunus_persica	Prupe.6G077300_v2.0.a1
pyrus_communis	pycom03g07480 pycom11g08930
rosa_chinensis	RchiOBHm_Chr5g0064541 RchiOBHm_Chr5g0064551 RchiOBHm_Chr5g0064811 RchiOBHm_Chr5g0064841
rosa_laevigata	RLG00000001342 RLG00000035732 RLG00000035734 RLG00000035736
rosa_roxburghii	Rroxscaffold_1G00016450 Rroxscaffold_1G00016480 Rroxscaffold_6G00399790 Rroxscaffold_6G00400120
rosa_rugosa	Rorug05G0366000 Rorug05G0366100 Rorug05G0366500
rosa_samantha	Rh3CG275300 Rh3DG272600 Rh5AG424000 Rh5BG439400 Rh5CG462000 Rh5CG462100 Rh5DG452700 Rh5DG452900
rosa_wichuraiana	Rw5G039860 Rw5G039880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	201
AciI	CCGC	4 cut(s)	24, 55, 201, 210
AclWI	GGATC	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	201
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	2 cut(s)	144, 215
AluI	AGCT	2 cut(s)	144, 215
Alw21I	GWGCWC	1 cut(s)	129
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	1 cut(s)	37
ApaLI	GTGCAC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	129
BccI	CCATC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	55, 202
BlsI	GCNGC	2 cut(s)	56, 203
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	3 cut(s)	19, 53, 117
BmrI	ACTGGG	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	47, 111
Bse1I	ACTGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	47, 111
BseNI	ACTGG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	36
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	20, 129
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	4 cut(s)	24, 55, 201, 210
BspANI	GGCC	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	19, 53, 117
BspPI	GGATC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	47, 111
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	2 cut(s)	47, 111
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 207, 221
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	176
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	7 cut(s)	9, 18, 39, 54, 116, 144, 215
CviKI_1	RGCY	7 cut(s)	9, 18, 39, 54, 116, 144, 215
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	47, 111
Eco24I	GRGCYC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	47, 111
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	47, 111
FaeI	CATG	1 cut(s)	183
FaiI	YATR	1 cut(s)	181
FatI	CATG	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	55, 202
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	55, 202
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	55, 202
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	127, 171, 195
Hpy188I	TCNGA	1 cut(s)	120
Hpy8I	GTNNAC	3 cut(s)	127, 171, 195
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	127, 159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 207, 221
Hsp92II	CATG	1 cut(s)	183
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	4 cut(s)	23, 51, 121, 212
LpnPI	CCDG	7 cut(s)	24, 49, 88, 106, 122, 197, 204
MaeI	CTAG	1 cut(s)	6
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	63, 139, 156
MhlI	GDGCHC	2 cut(s)	20, 129
MluCI	AATT	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	178
MspI	CCGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	15, 207, 221
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	3 cut(s)	19, 53, 117
NmeAIII	GCCGAG	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	56, 203
PspN4I	GGNNCC	3 cut(s)	19, 53, 117
PspPI	GGNCC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	178
SatI	GCNGC	2 cut(s)	55, 202
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	20, 129
SetI	ASST	5 cut(s)	126, 146, 157, 217, 223
SmiMI	CAYNNNNRTG	1 cut(s)	178
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	4 cut(s)	24, 55, 201, 210
SspMI	CTAG	1 cut(s)	6
StyI	CCWWGG	2 cut(s)	47, 111
TaaI	ACNGT	1 cut(s)	100
TasI	AATT	1 cut(s)	86
TauI	GCSGC	2 cut(s)	57, 204
TscAI	CASTG	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	18
VneI	GTGCAC	1 cut(s)	125
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.