Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003424

Physical Location & Seq

Genomic Coordinates Forward (+)

5284318 .. 5286509

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCCTGCCACAGCAGGAAGGGTTCGCATGCCCGCGAACAATCGGGTGCATAGTAGTGCTGCCCTTCAAACCCATGGTATATGGCAGAGTGCAATTGGGTATGACCCCTATGCACCCAACAAAGAGGACAACAAGACTTCTGCGCAACCCAATTTGTCGAACTCTGAACCAGACGCTGAGAATGCGTATGCGAGCTTCCAGGGCCTCCTTGCACTTGCCCGTATAACTGGGTCCAATGCTGATGAGGCTCGTGGGGCTTGCAAGAGGTGTGGCCGTGTTGGGCACCTCAACTTTCAATGCAGGAACTTTCTGAGTGTTAAGGAAGACAAGGATAAAGACCCAGACGCGATTCAGGCTGATGTTGCGTCTGAATTGGGTAAGTTGAAGAGGAAGCTGGGAAGGACAAATGGGAAAAACGTGGCTGAGAGTGAAGAGAGTGAGGATGAGGATGAAGACAGTGAGAGTTCAGATTCAGATTATGATTCAGAGATTGAGAAGATTATTGCTCAAAGAAATGGGAAAAGGGCCGTTAGAAAGGATTCTAAAAAGAAGAATAAAGACTCAGATGGTGATGTGTCGGATACGGATTCCGGGGAAAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGTAGCAAGAGGAAATACAATGATGATTCAGATGATTCAGATGAATGTAGGAAGAAAAGAAGGAAGGAAAAGCGGAGGAAGAGGGATGAGTCCTCAGAGGAGGATGGTGAGCGCCGGCGGCGGCATAGGAAGAGTAGGAAGGAGAAGAGGAGGAGGAGAAGTCATCGGTATTCGGATGACTCTGAATCTGATTCGTCTGAAGATTCTCATTCTCGTAAACACCGCAGTCGGAGGAGCAGAAAGGCAGTCACACCATCTGATTCTGATGATGATTCACGGGTAGGTAGGGGCAGGAAGCGATCTGAGAAGAAGAGCCGGAAGCGCCATCATGAGGATGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

324

Amino Acids

36.95

Weight (kDa)

9.62

Isoelectric Point (pI)

86.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28910 AT2G28910 AT2G28910
fragaria_vesca	FvH4_3g36111 FvH4_3g36111
malus_domestica	MD03G1093300.v1.1 MD11G1107700.v1.1 MD11G1108100.v1.1
prunus_persica	Prupe.6G077300_v2.0.a1
pyrus_communis	pycom03g07480 pycom11g08930
rosa_chinensis	RchiOBHm_Chr5g0064541 RchiOBHm_Chr5g0064551 RchiOBHm_Chr5g0064811 RchiOBHm_Chr5g0064841
rosa_laevigata	RLG00000001342 RLG00000035732 RLG00000035734 RLG00000035736
rosa_roxburghii	Rroxscaffold_1G00016450 Rroxscaffold_1G00016480 Rroxscaffold_6G00399790 Rroxscaffold_6G00400120
rosa_rugosa	Rorug05G0366000 Rorug05G0366100 Rorug05G0366500
rosa_samantha	Rh3CG275300 Rh3DG272600 Rh5AG424000 Rh5BG439400 Rh5CG462000 Rh5CG462100 Rh5DG452700 Rh5DG452900
rosa_wichuraiana	Rw5G039860 Rw5G039880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	282
AccII	CGCG	2 cut(s)	35, 347
AciI	CCGC	5 cut(s)	33, 700, 745, 748, 850
AcoI	YGGCCR	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	846
AfiI	CCNNNNNNNGG	2 cut(s)	597, 958
AgsI	TTSAA	3 cut(s)	68, 296, 385
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	195, 394
AluI	AGCT	2 cut(s)	195, 394
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	202, 271, 525
ApeKI	GCWGC	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	538
AspLEI	GCGC	3 cut(s)	145, 741, 951
AspS9I	GGNCC	3 cut(s)	202, 231, 525
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	581, 746
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	179, 211
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	330, 459
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	4 cut(s)	560, 725, 889, 960
BceAI	ACGGC	2 cut(s)	258, 512
BciT130I	CCWGG	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	592
BfoI	RGCGCY	2 cut(s)	742, 952
BfuI	GTATCC	1 cut(s)	574
BisI	GCNGC	3 cut(s)	60, 746, 749
BlsI	GCNGC	3 cut(s)	61, 747, 750
Bme1390I	CCNGG	2 cut(s)	200, 592
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	3 cut(s)	202, 231, 525
BmiI	GGNNCC	2 cut(s)	232, 284
BmrFI	CCNGG	2 cut(s)	200, 592
BmrI	ACTGGG	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	2 cut(s)	330, 459
BpuMI	CCSGG	1 cut(s)	592
BsaJI	CCNNGG	3 cut(s)	73, 199, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bsc4I	CCNNNNNNNGG	2 cut(s)	597, 958
Bse118I	RCCGGY	1 cut(s)	741
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	73, 199, 591
BseGI	GGATG	6 cut(s)	448, 454, 718, 736, 808, 967
BseLI	CCNNNNNNNGG	2 cut(s)	597, 958
BseMII	CTCAG	6 cut(s)	168, 302, 414, 576, 735, 921
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	6 cut(s)	640, 740, 790, 793, 796, 874
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	394
Bsh1236I	CGCG	2 cut(s)	35, 347
BshFI	GGCC	3 cut(s)	204, 273, 527
BshNI	GGYRCC	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	591, 742, 943
BslI	CCNNNNNNNGG	2 cut(s)	597, 958
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	204, 273, 527
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	926
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	5 cut(s)	33, 700, 745, 748, 850
BspANI	GGCC	3 cut(s)	204, 273, 527
BspCNI	CTCAG	6 cut(s)	169, 303, 415, 575, 734, 922
BspFNI	CGCG	2 cut(s)	35, 347
BspHI	TCATGA	1 cut(s)	955
BspLI	GGNNCC	2 cut(s)	232, 284
BspQI	GCTCTTC	1 cut(s)	932
BspT107I	GGYRCC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	741
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	741
BssECI	CCNNGG	3 cut(s)	73, 199, 591
BssMI	GATC	1 cut(s)	926
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	8 cut(s)	380, 426, 599, 617, 701, 752, 767, 932
BstC8I	GCNNGC	6 cut(s)	6, 29, 33, 193, 259, 743
BstDEI	CTNAG	6 cut(s)	177, 311, 423, 562, 721, 930
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	6 cut(s)	448, 454, 718, 736, 808, 967
BstFNI	CGCG	2 cut(s)	35, 347
BstH2I	RGCGCY	2 cut(s)	742, 952
BstHHI	GCGC	3 cut(s)	145, 741, 951
BstKTI	GATC	1 cut(s)	929
BstMBI	GATC	1 cut(s)	926
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 201, 245, 254, 353, 362, 745, 948
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	198, 590
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	2 cut(s)	35, 347
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	2 cut(s)	330, 459
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	204, 273, 527
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	6 cut(s)	448, 454, 718, 736, 808, 967
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	6 cut(s)	6, 29, 33, 193, 259, 743
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	955
CfoI	GCGC	3 cut(s)	145, 741, 951
Cfr10I	RCCGGY	1 cut(s)	741
Cfr13I	GGNCC	3 cut(s)	202, 231, 525
CseI	GACGC	3 cut(s)	182, 353, 354
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	3 cut(s)	28, 74, 956
DdeI	CTNAG	6 cut(s)	177, 311, 423, 562, 721, 930
DpnI	GATC	1 cut(s)	928
DpnII	GATC	1 cut(s)	926
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	8 cut(s)	380, 426, 599, 617, 701, 752, 767, 932
EarI	CTCTTC	8 cut(s)	380, 426, 599, 617, 701, 752, 767, 932
Eco130I	CCWWGG	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	846
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	3 cut(s)	31, 77, 959
FatI	CATG	3 cut(s)	27, 73, 955
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	60, 746, 749
FokI	GGATG	5 cut(s)	455, 461, 725, 743, 815
Fsp4HI	GCNGC	3 cut(s)	60, 746, 749
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	3 cut(s)	144, 740, 950
GluI	GCNGC	3 cut(s)	60, 746, 749
GsaI	CCCAGC	1 cut(s)	398
HaeII	RGCGCY	2 cut(s)	742, 952
HaeIII	GGCC	3 cut(s)	204, 273, 527
HapII	CCGG	3 cut(s)	591, 742, 943
HgaI	GACGC	3 cut(s)	182, 353, 354
HhaI	GCGC	3 cut(s)	145, 741, 951
Hin1II	CATG	3 cut(s)	31, 77, 959
Hin6I	GCGC	3 cut(s)	143, 739, 949
HinP1I	GCGC	3 cut(s)	143, 739, 949
HpaII	CCGG	3 cut(s)	591, 742, 943
HphI	GGTGA	2 cut(s)	581, 746
Hpy166II	GTNNAC	1 cut(s)	845
Hpy188III	TCNNGA	1 cut(s)	956
Hpy8I	GTNNAC	1 cut(s)	845
HpyAV	CCTTC	7 cut(s)	12, 74, 393, 606, 681, 685, 760
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	6 cut(s)	49, 92, 113, 212, 261, 300
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 201, 245, 254, 353, 362, 745, 948
HpyF3I	CTNAG	6 cut(s)	177, 311, 423, 562, 721, 930
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	31, 77, 959
HspAI	GCGC	3 cut(s)	143, 739, 949
KroI	GCCGGC	1 cut(s)	741
KroNI	GCCGGC	1 cut(s)	743
Kzo9I	GATC	1 cut(s)	926
LguI	GCTCTTC	1 cut(s)	932
LmnI	GCTCC	1 cut(s)	861
Lsp1109I	GCAGC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	1 cut(s)	928
MboI	GATC	1 cut(s)	926
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	93, 151, 371
MlyI	GAGTC	3 cut(s)	554, 725, 800
MmeI	TCCRAC	2 cut(s)	558, 836
MreI	CGCCGGCG	1 cut(s)	741
MroNI	GCCGGC	1 cut(s)	741
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	54, 960
MspI	CCGG	3 cut(s)	591, 742, 943
MspR9I	CCNGG	2 cut(s)	200, 592
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	35, 347
MwoI	GCNNNNNNNGC	8 cut(s)	182, 201, 245, 254, 353, 362, 745, 948
NaeI	GCCGGC	1 cut(s)	743
NciI	CCSGG	1 cut(s)	592
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	926
NgoMIV	GCCGGC	1 cut(s)	741
NlaIII	CATG	3 cut(s)	31, 77, 959
NlaIV	GGNNCC	2 cut(s)	232, 284
NmuCI	GTSAC	1 cut(s)	874
NsbI	TGCGCA	1 cut(s)	144
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	955
PciSI	GCTCTTC	1 cut(s)	932
PctI	GAATGC	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	743
PdmI	GAANNNNTTC	1 cut(s)	538
PkrI	GCNGC	3 cut(s)	61, 747, 750
PleI	GAGTC	3 cut(s)	554, 724, 800
PpsI	GAGTC	3 cut(s)	554, 724, 800
Psp6I	CCWGG	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	232, 284
PspPI	GGNCC	3 cut(s)	202, 231, 525
PstNI	CAGNNNCTG	1 cut(s)	176
RseI	CAYNNNNRTG	2 cut(s)	54, 960
SapI	GCTCTTC	1 cut(s)	932
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	3 cut(s)	60, 746, 749
Sau3AI	GATC	1 cut(s)	926
Sau96I	GGNCC	3 cut(s)	202, 231, 525
SchI	GAGTC	3 cut(s)	554, 725, 800
ScrFI	CCNGG	2 cut(s)	200, 592
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	197, 269, 288, 396, 420, 617, 913
SgrAI	CRCCGGYG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	54, 960
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	3 cut(s)	93, 151, 371
SsiI	CCGC	5 cut(s)	33, 700, 745, 748, 850
StyD4I	CCNGG	2 cut(s)	198, 590
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	158, 617
TasI	AATT	3 cut(s)	93, 151, 371
TauI	GCSGC	2 cut(s)	748, 751
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	2 cut(s)	465, 684
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	231
XceI	RCATGY	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.