RchiOBHm_Chr5g0064811

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003424
Physical Location & Seq
Reverse (-)
70746410 .. 70747970
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34074

Sequence Viewer

Length: 708 bp
ATGCTGGCCACCGCAGGAAGGGTTCGCATGCCCCCAATCGGATACACAATAGTGTTGCTCTTCAAACTCATGCCGAATTTGTCAAACTCAAAACCAGATGCTGCGAATGCATATGCTAGCTATCAAGGCCTTCTCCAACTCGTTCGTATAACGGGGCAGAATTCTGACGAGGTTCGTGGGGCGTGTAAGAGGTGCGGCCGGGTTGGGCACCTCACCTATCAATGTAGGAACTTTCTGAGTGTTAAGAACAAGGAGAAGGAGGCCCCTGAAGTTATCCAGACTAATGTTTCTTTTGAGTTGGGCAAGTTGGAGGGGAAGCTGGGTAAAGCGAAGGGAAAAGATGTTGTTAAGACTGATAGTGAGGATGAGGATGAAGACATTGAGAGTTCAGATTCGGATTATGATTCTTATATGGAGAGGCTCATTGCTCAAAGTTATGGGAAAAAGAGCTTTCGAAAGGATAAGCTGGAAAAGAAGAACAAGGAGTCAAGGACTCGGATGTTGATGGTTCAGATACAGATTCTGGGGAGAGGAAGAAGAGAGGAAGGTCAAAGAAGAGGAGAAGCAGAAAGAGGAAACATGATGATTCAGAAGATTCTGAAAAGGATAGGAAGAAAAGAAGAAAGGAGAAACGAAGAAAGAGAGATGAGTCATCGGATGAGGATGATAAGCGACATCGACGACATAGGAAGAGTAGTAAGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

235

Amino Acids

26.94

Weight (kDa)

9.55

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 58 - 77 1e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 207
AciI CCGC 2 cut(s) 12, 195
AcoI YGGCCR 2 cut(s) 6, 196
AcsI RAATTY 2 cut(s) 76, 160
AcuI CTGAAG 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 18, 38
AgsI TTSAA 1 cut(s) 64
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 4 cut(s) 120, 319, 450, 466
AluI AGCT 4 cut(s) 120, 319, 450, 466
AlwNI CAGNNNCTG 2 cut(s) 101, 523
AoxI GGCC 4 cut(s) 6, 127, 196, 261
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 2 cut(s) 76, 160
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 454
AsuNHI GCTAGC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 210
BalI TGGCCA 1 cut(s) 8
BanI GGYRCC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 499
BciVI GTATCC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 200
BfaI CTAG 1 cut(s) 117
BfuI GTATCC 1 cut(s) 35
BisI GCNGC 2 cut(s) 102, 196
BlsI GCNGC 2 cut(s) 103, 197
Bme1390I CCNGG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 209, 264
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 454
BpuMI CCSGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 38
Bse3DI GCAATG 1 cut(s) 423
BseGI GGATG 5 cut(s) 370, 376, 504, 663, 669
BseLI CCNNNNNNNGG 2 cut(s) 18, 38
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 573
BseSI GKGCMC 1 cut(s) 210
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 88
BseYI CCCAGC 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 4 cut(s) 8, 129, 198, 263
BshNI GGYRCC 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 18, 38
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 4 cut(s) 8, 129, 198, 263
Bsp119I TTCGAA 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 210
BspACI CCGC 2 cut(s) 12, 195
BspANI GGCC 4 cut(s) 8, 129, 198, 263
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 2 cut(s) 209, 264
BspOI GCTAGC 1 cut(s) 120
BspQI GCTCTTC 1 cut(s) 65
BspT104I TTCGAA 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 423
Bst6I CTCTTC 4 cut(s) 65, 532, 550, 685
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 3 cut(s) 6, 29, 118
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 5 cut(s) 370, 376, 504, 663, 669
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 107, 126
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 381
BstZI CGGCCG 1 cut(s) 196
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 4 cut(s) 8, 129, 198, 263
BtsCI GGATG 5 cut(s) 370, 376, 504, 663, 669
Cac8I GCNNGC 3 cut(s) 6, 29, 118
CaiI CAGNNNCTG 2 cut(s) 101, 523
Cfr13I GGNCC 1 cut(s) 262
CviAII CATG 3 cut(s) 28, 70, 580
CviJI RGCY 9 cut(s) 8, 120, 129, 198, 263, 319, 421, 450, 466
CviKI_1 RGCY 9 cut(s) 8, 120, 129, 198, 263, 319, 421, 450, 466
DdeI CTNAG 1 cut(s) 236
EaeI YGGCCR 2 cut(s) 6, 196
EagI CGGCCG 1 cut(s) 196
Eam1104I CTCTTC 4 cut(s) 65, 532, 550, 685
EarI CTCTTC 4 cut(s) 65, 532, 550, 685
EclXI CGGCCG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 129
Eco52I CGGCCG 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 112
FaeI CATG 3 cut(s) 31, 73, 583
FatI CATG 3 cut(s) 27, 69, 579
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 102, 196
FokI GGATG 5 cut(s) 377, 383, 511, 670, 676
Fsp4HI GCNGC 2 cut(s) 102, 196
FspBI CTAG 1 cut(s) 117
GluI GCNGC 2 cut(s) 102, 196
GsaI CCCAGC 1 cut(s) 323
HaeIII GGCC 4 cut(s) 8, 129, 198, 263
HapII CCGG 1 cut(s) 199
Hin1II CATG 3 cut(s) 31, 73, 583
HinfI GANTC 8 cut(s) 392, 404, 485, 493, 520, 586, 595, 649
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 683
HpyAV CCTTC 5 cut(s) 12, 140, 250, 325, 539
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 126
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 3 cut(s) 31, 73, 583
LguI GCTCTTC 1 cut(s) 65
LpnPI CCDG 7 cut(s) 108, 212, 279, 290, 305, 452, 509
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 210
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 3 cut(s) 76, 160, 703
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 3 cut(s) 487, 494, 658
MmeI TCCRAC 2 cut(s) 160, 288
Mox20I TGGCCA 1 cut(s) 8
Mph1103I ATGCAT 1 cut(s) 112
MscI TGGCCA 1 cut(s) 8
MseI TTAA 2 cut(s) 243, 348
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 8
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 107, 126
NciI CCSGG 1 cut(s) 200
NdeI CATATG 1 cut(s) 112
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 3 cut(s) 31, 73, 583
NlaIV GGNNCC 2 cut(s) 209, 264
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 31
NspV TTCGAA 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 50
PaeI GCATGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 65
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 5 cut(s) 392, 404, 520, 586, 595
PkrI GCNGC 2 cut(s) 103, 197
PleI GAGTC 3 cut(s) 487, 493, 657
PpsI GAGTC 3 cut(s) 487, 493, 657
PspFI CCCAGC 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 209, 264
PspPI GGNCC 1 cut(s) 262
PstNI CAGNNNCTG 2 cut(s) 101, 523
RseI CAYNNNNRTG 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 243, 348
SatI GCNGC 2 cut(s) 102, 196
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 3 cut(s) 487, 494, 658
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 210
SetI ASST 9 cut(s) 122, 174, 194, 213, 218, 321, 452, 468, 550
SfaNI GCATC 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 50
SphI GCATGC 1 cut(s) 31
Sse9I AATT 3 cut(s) 76, 160, 703
SseBI AGGCCT 1 cut(s) 129
SsiI CCGC 2 cut(s) 12, 195
SspMI CTAG 1 cut(s) 117
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 198
TaqI TCGA 2 cut(s) 454, 678
TasI AATT 3 cut(s) 76, 160, 703
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 5 cut(s) 392, 404, 520, 586, 595
Tru1I TTAA 2 cut(s) 243, 348
Tru9I TTAA 2 cut(s) 243, 348
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 387
XapI RAATTY 2 cut(s) 76, 160
XceI RCATGY 1 cut(s) 31
XspI CTAG 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.