Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003424

Physical Location & Seq

Genomic Coordinates Reverse (-)

73086466 .. 73088506

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG424000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCCGGCCACCGCAGGAAGGGTTCGCATGCCGGCGAACAACCGGGTGCACAGTAGTGCTGCCCTTCAAACTCACGGCATATGGCAGAGTGCAATTGGGTATGATCCCTATGCACCCACCAAAGAGGAAAGTAAGAGCTCTTCTCAGGTGAATTTGGCAAACTCTGAACCAGATGCTGAGAATCCGTATGCTAGCTTCCAGGGCCTCCTTGCCCTTGCCCGTATAACCGGGTCCAATGCTGATGAGGCTCGTGGGGCGTGCAAGAGGTGCGGCCGTGTTGGGCATCTCAGCTTTCAGTGCAGGAACTTTCTGAGTGTTAAGGAAGACAAGGAGAAAGACCCAGAAGCTATTCAGGCTGATGTTGCTTCTGAGTTGAGTAAGTTGAGGGGGAAGCTGGGAAAGGGGATTGGGAAAAATGTGGTTGAGGCTGATAGTGAGGAGGAGGATGAAGACACTGAGACTTCGGATTCAGACTATGATTCCGAGATGGAGAGGCTCATTGCTAAAAAAAATGGGAAAAAGAGTGTCTTAAAGGAGAAGTCAAAAAAGAAGAATGAGGACTCAGATGTTGATGGGTCTGATACAGATTCTGGGGAGAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGAAGCAGCAAGAGGAAACATGATGATTTGGATGACTCTGAAGAAGACAGGAAGAAAAGGAGAAAGGAGAAACGGAGAAAGAGGGATGAGTCTTCTGATGAGGATGGTAAACGACGTCGACGACATAGGAAGAGTAGGAAGGAGAAAAGGAGGAGGAGAAGTCATCGGTATTCCGATGATTCTGAGTCTGATGCATCTGAAGATAGACACCGCAGTCGGAGGAGCAGGAGGGCAGCAACACCATCTGATTCCGATTCAAGTGGCTCCGATGATGCGTGGGTAGGAAGGGGCAGGAGACGATCTGAGAAGAAGAGCAGGAAACACCATCGTGATGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

322

Amino Acids

36.69

Weight (kDa)

9.67

Isoelectric Point (pI)

82.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28910 AT2G28910 AT2G28910
fragaria_vesca	FvH4_3g36111 FvH4_3g36111
malus_domestica	MD03G1093300.v1.1 MD11G1107700.v1.1 MD11G1108100.v1.1
prunus_persica	Prupe.6G077300_v2.0.a1
pyrus_communis	pycom03g07480 pycom11g08930
rosa_chinensis	RchiOBHm_Chr5g0064541 RchiOBHm_Chr5g0064551 RchiOBHm_Chr5g0064811 RchiOBHm_Chr5g0064841
rosa_laevigata	RLG00000001342 RLG00000035732 RLG00000035734 RLG00000035736
rosa_roxburghii	Rroxscaffold_1G00016450 Rroxscaffold_1G00016480 Rroxscaffold_6G00399790 Rroxscaffold_6G00400120
rosa_rugosa	Rorug05G0366000 Rorug05G0366100 Rorug05G0366500
rosa_samantha	Rh3CG275300 Rh3DG272600 Rh5AG424000 Rh5BG439400 Rh5CG462000 Rh5CG462100 Rh5DG452700 Rh5DG452900
rosa_wichuraiana	Rw5G039860 Rw5G039880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	840
AatII	GACGTC	1 cut(s)	745
AccI	GTMKAC	1 cut(s)	745
AciI	CCGC	3 cut(s)	12, 270, 838
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	2 cut(s)	6, 271
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	2 cut(s)	687, 846
AcyI	GRCGYC	1 cut(s)	742
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	68, 885
AjnI	CCWGG	1 cut(s)	198
AleI	CACNNNNGTG	2 cut(s)	54, 954
AluBI	AGCT	5 cut(s)	138, 195, 291, 347, 394
AluI	AGCT	5 cut(s)	138, 195, 291, 347, 394
Alw21I	GWGCWC	2 cut(s)	51, 140
Alw26I	GTCTC	2 cut(s)	452, 916
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	2 cut(s)	176, 590
AoxI	GGCC	3 cut(s)	6, 202, 271
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	59, 633, 860
ApoI	RAATTY	1 cut(s)	151
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	202, 231
AsuC2I	CCSGG	2 cut(s)	44, 229
AsuHPI	GGTGA	1 cut(s)	160
AsuNHI	GCTAGC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	4 cut(s)	124, 156, 179, 211
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	4 cut(s)	330, 456, 678, 711
Bbv12I	GWGCWC	2 cut(s)	51, 140
BbvI	GCAGC	3 cut(s)	46, 645, 872
BccI	CCATC	5 cut(s)	481, 566, 725, 877, 960
BceAI	ACGGC	2 cut(s)	91, 258
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	2 cut(s)	44, 229
BcoDI	GTCTC	2 cut(s)	452, 916
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	4 cut(s)	60, 271, 634, 861
BlsI	GCNGC	4 cut(s)	61, 272, 635, 862
Bme1390I	CCNGG	3 cut(s)	44, 200, 229
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	202, 231
BmiI	GGNNCC	2 cut(s)	232, 892
BmrFI	CCNGG	3 cut(s)	44, 200, 229
BmsI	GCATC	5 cut(s)	163, 292, 808, 830, 889
BmtI	GCTAGC	1 cut(s)	195
BpiI	GAAGAC	4 cut(s)	330, 456, 678, 711
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpuMI	CCSGG	2 cut(s)	44, 229
BsaHI	GRCGYC	1 cut(s)	742
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse118I	RCCGGY	2 cut(s)	4, 31
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	4 cut(s)	451, 664, 718, 736
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	9 cut(s)	158, 168, 301, 302, 360, 447, 576, 801, 921
BseRI	GAGGAG	6 cut(s)	452, 455, 640, 793, 796, 862
BseSI	GKGCMC	1 cut(s)	51
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	3 cut(s)	46, 645, 872
BseYI	CCCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	319
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	8, 204, 273
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	51, 140
BsiSI	CCGG	4 cut(s)	5, 32, 43, 228
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	452, 916
BsmBI	CGTCTC	1 cut(s)	916
BsnI	GGCC	3 cut(s)	8, 204, 273
Bsp1286I	GDGCHC	2 cut(s)	51, 140
Bsp143I	GATC	2 cut(s)	103, 926
BspACI	CCGC	3 cut(s)	12, 270, 838
BspANI	GGCC	3 cut(s)	8, 204, 273
BspCNI	CTCAG	9 cut(s)	157, 169, 300, 303, 361, 448, 575, 802, 922
BspLI	GGNNCC	2 cut(s)	232, 892
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	98
BspQI	GCTCTTC	2 cut(s)	145, 932
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	2 cut(s)	4, 31
BssAI	RCCGGY	2 cut(s)	4, 31
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	103, 926
BssNI	GRCGYC	1 cut(s)	742
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	5 cut(s)	145, 599, 617, 752, 932
BstACI	GRCGYC	1 cut(s)	742
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	5 cut(s)	6, 29, 33, 193, 259
BstDEI	CTNAG	9 cut(s)	144, 177, 287, 311, 369, 456, 562, 810, 930
BstF5I	GGATG	4 cut(s)	451, 664, 718, 736
BstKTI	GATC	2 cut(s)	106, 929
BstMAI	GTCTC	2 cut(s)	452, 916
BstMBI	GATC	2 cut(s)	103, 926
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	7 cut(s)	201, 245, 254, 267, 297, 353, 362
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	3 cut(s)	42, 198, 227
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	46, 645, 872
BstV2I	GAAGAC	4 cut(s)	330, 456, 678, 711
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	8, 204, 273
BtsCI	GGATG	4 cut(s)	451, 664, 718, 736
BtsIMutI	CAGTG	2 cut(s)	302, 453
Cac8I	GCNNGC	5 cut(s)	6, 29, 33, 193, 259
CaiI	CAGNNNCTG	2 cut(s)	176, 590
Cfr10I	RCCGGY	2 cut(s)	4, 31
Cfr13I	GGNCC	2 cut(s)	202, 231
CviAII	CATG	2 cut(s)	28, 647
DdeI	CTNAG	9 cut(s)	144, 177, 287, 311, 369, 456, 562, 810, 930
DpnI	GATC	2 cut(s)	105, 928
DpnII	GATC	2 cut(s)	103, 926
DrdI	GACNNNNNNGTC	1 cut(s)	840
DseDI	GACNNNNNNGTC	1 cut(s)	840
EaeI	YGGCCR	2 cut(s)	6, 271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	5 cut(s)	145, 599, 617, 752, 932
EarI	CTCTTC	5 cut(s)	145, 599, 617, 752, 932
Ecl136II	GAGCTC	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	231
Eco52I	CGGCCG	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	2 cut(s)	687, 846
EcoICRI	GAGCTC	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	823
EcoT38I	GRGCYC	1 cut(s)	140
Esp3I	CGTCTC	1 cut(s)	916
FaeI	CATG	2 cut(s)	31, 650
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FatI	CATG	2 cut(s)	27, 646
FauNDI	CATATG	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	745
Fnu4HI	GCNGC	4 cut(s)	60, 271, 634, 861
FokI	GGATG	4 cut(s)	458, 671, 725, 743
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	4 cut(s)	60, 271, 634, 861
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	4 cut(s)	60, 271, 634, 861
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	3 cut(s)	8, 204, 273
HapII	CCGG	4 cut(s)	5, 32, 43, 228
Hin1I	GRCGYC	1 cut(s)	742
Hin1II	CATG	2 cut(s)	31, 650
HincII	GTYRAC	1 cut(s)	746
HindII	GTYRAC	1 cut(s)	746
HpaII	CCGG	4 cut(s)	5, 32, 43, 228
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	3 cut(s)	49, 737, 746
Hpy188III	TCNNGA	1 cut(s)	956
Hpy8I	GTNNAC	3 cut(s)	49, 737, 746
Hpy99I	CGWCG	3 cut(s)	744, 747, 750
HpyAV	CCTTC	5 cut(s)	12, 74, 606, 760, 906
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	742
HpyCH4V	TGCA	6 cut(s)	49, 92, 113, 261, 300, 821
HpyF10VI	GCNNNNNNNGC	7 cut(s)	201, 245, 254, 267, 297, 353, 362
HpyF3I	CTNAG	9 cut(s)	144, 177, 287, 311, 369, 456, 562, 810, 930
HpySE526I	ACGT	1 cut(s)	742
Hsp92I	GRCGYC	1 cut(s)	742
Hsp92II	CATG	2 cut(s)	31, 650
KroI	GCCGGC	2 cut(s)	4, 31
KroNI	GCCGGC	2 cut(s)	6, 33
Kzo9I	GATC	2 cut(s)	103, 926
LguI	GCTCTTC	2 cut(s)	145, 932
LmnI	GCTCC	2 cut(s)	849, 896
Lsp1109I	GCAGC	3 cut(s)	46, 645, 872
LweI	GCATC	5 cut(s)	163, 292, 808, 830, 889
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	742
MalI	GATC	2 cut(s)	105, 928
MboI	GATC	2 cut(s)	103, 926
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	51, 140
MluCI	AATT	2 cut(s)	93, 151
MlyI	GAGTC	4 cut(s)	554, 656, 725, 821
MmeI	TCCRAC	1 cut(s)	824
Mph1103I	ATGCAT	1 cut(s)	823
MroNI	GCCGGC	2 cut(s)	4, 31
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	318, 530
MslI	CAYNNNNRTG	3 cut(s)	54, 954, 957
MspI	CCGG	4 cut(s)	5, 32, 43, 228
MspR9I	CCNGG	3 cut(s)	44, 200, 229
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	7 cut(s)	201, 245, 254, 267, 297, 353, 362
NaeI	GCCGGC	2 cut(s)	6, 33
NciI	CCSGG	2 cut(s)	44, 229
NdeI	CATATG	1 cut(s)	80
NdeII	GATC	2 cut(s)	103, 926
NgoMIV	GCCGGC	2 cut(s)	4, 31
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	31, 650
NlaIV	GGNNCC	2 cut(s)	232, 892
NsiI	ATGCAT	1 cut(s)	823
NspI	RCATGY	1 cut(s)	31
OliI	CACNNNNGTG	2 cut(s)	54, 954
PaeI	GCATGC	1 cut(s)	31
PciSI	GCTCTTC	2 cut(s)	145, 932
PcsI	WCGNNNNNNNCGW	1 cut(s)	745
PdiI	GCCGGC	2 cut(s)	6, 33
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	7 cut(s)	181, 467, 479, 587, 806, 875, 881
PkrI	GCNGC	4 cut(s)	61, 272, 635, 862
PleI	GAGTC	4 cut(s)	554, 656, 724, 820
PpsI	GAGTC	4 cut(s)	554, 656, 724, 820
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	232, 892
PspPI	GGNCC	2 cut(s)	202, 231
PstNI	CAGNNNCTG	2 cut(s)	176, 590
RseI	CAYNNNNRTG	3 cut(s)	54, 954, 957
SacI	GAGCTC	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	744
SapI	GCTCTTC	2 cut(s)	145, 932
SaqAI	TTAA	2 cut(s)	318, 530
SatI	GCNGC	4 cut(s)	60, 271, 634, 861
Sau3AI	GATC	2 cut(s)	103, 926
Sau96I	GGNCC	2 cut(s)	202, 231
SchI	GAGTC	4 cut(s)	554, 656, 725, 821
ScrFI	CCNGG	3 cut(s)	44, 200, 229
SduI	GDGCHC	2 cut(s)	51, 140
SetI	ASST	9 cut(s)	140, 150, 197, 269, 293, 349, 396, 617, 745
SfaNI	GCATC	5 cut(s)	163, 292, 808, 830, 889
SgrDI	CGTCGACG	1 cut(s)	744
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	3 cut(s)	54, 954, 957
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	2 cut(s)	93, 151
SsiI	CCGC	3 cut(s)	12, 270, 838
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	42, 198, 227
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	745
TaqI	TCGA	2 cut(s)	617, 745
TasI	AATT	2 cut(s)	93, 151
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	7 cut(s)	181, 467, 479, 587, 806, 875, 881
Tru1I	TTAA	2 cut(s)	318, 530
Tru9I	TTAA	2 cut(s)	318, 530
TscAI	CASTG	2 cut(s)	302, 460
TseI	GCWGC	3 cut(s)	59, 633, 860
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	2 cut(s)	174, 715
TspRI	CASTG	2 cut(s)	302, 460
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	745
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	743
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.