Rw5G039860

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003424
Physical Location & Seq
Reverse (-)
70402325 .. 70403293
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039860.1

Sequence Viewer

Length: 969 bp
ATGCCGGCCACCGCAGGAAGGGTTCGCATGCCGGCGAACAATCGGGTGCACAGTAGTGCTGCCCTTCAAACTCACGGCATATGGCAGAGTGCAATTGGGTATGATCCCTATGCACCCACCAAAGAGGAAGGTAAGAGCTCTTCTCAGGTGAATTTGGCAAACTCTGAACCAGATGCTGAGAATCCATATGCTAGCTTCCAGGGCCTCCTTGCTCTTGCCCGTATAACTGGGTCCAATGCTGATGAGGCTCGTGGGGCGTGCAAGAGGTGTGGCCGTGTTGGGCATCTCAGCTTCCAGTGCAGGAACTTTCTGAGTGTTAAGGAAGACAAGGAGAAGGACCCAGAAGCTATTCAGGCTGATGTTGCTTCTGAGTTGAGTAAGTTGAGGGGGAAGCTGGGTAAGGGGATTGGGAAAAATGTGGTTGAGGCTGATAGTGAGGAGGAGGATGAAGACACTGAGACTTCGGATTCAGACTATGATTCCGAGATGGAGAGGCTCATTGCTAAAAAAAATGGGAAAAAGAGTGTCTTAAAGGAGAAGTCAAAAAATAAGAATGAGGACTCAGATGTTGATGGGTCTGATACAGATTCTGGGGAGAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGAAGCAGCAAGAGGAAACATGATGATTCGGATGACTCTGAAGAAGACAGGAAGAAAAGGAGAAAGGAGAAACGGAGAAGGAGGGATGAGTCTTCTGATGAGGATGGTAAACGACGTCGACGACATAGGAAGAGTAGGAAGGAGAAAAGGAGGAGGAGAAGTCATCGGTATTCCGATGATTCTGAGTCTGATGCATCTGAAGATAGACACCGCAGTCGGAGGAGCAGGAGGGCAGCAACACCATCTGATTCCGATTCAAGTGGCTCCGATGATGCGCGGGTAGGAAGGGGCAGGAGACGATCTGAGAAGAAGAGCAGGAAACACCATCGTGATGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

322

Amino Acids

36.61

Weight (kDa)

9.7

Isoelectric Point (pI)

86.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 840
AatII GACGTC 1 cut(s) 745
AccI GTMKAC 1 cut(s) 745
AccII CGCG 1 cut(s) 904
AciI CCGC 3 cut(s) 12, 838, 904
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 6, 271
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 2 cut(s) 687, 846
AcyI GRCGYC 1 cut(s) 742
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 68, 885
AjnI CCWGG 1 cut(s) 198
AleI CACNNNNGTG 2 cut(s) 54, 954
AluBI AGCT 5 cut(s) 138, 195, 291, 347, 394
AluI AGCT 5 cut(s) 138, 195, 291, 347, 394
Alw21I GWGCWC 2 cut(s) 51, 140
Alw26I GTCTC 2 cut(s) 452, 916
Alw44I GTGCAC 1 cut(s) 47
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 2 cut(s) 176, 590
AoxI GGCC 3 cut(s) 6, 202, 271
ApaLI GTGCAC 1 cut(s) 47
ApeKI GCWGC 3 cut(s) 59, 633, 860
ApoI RAATTY 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 904
AspS9I GGNCC 3 cut(s) 202, 231, 337
AsuHPI GGTGA 1 cut(s) 160
AsuNHI GCTAGC 1 cut(s) 191
AvaII GGWCC 2 cut(s) 231, 337
BaeGI GKGCMC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 124, 156
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 4 cut(s) 330, 456, 678, 711
Bbv12I GWGCWC 2 cut(s) 51, 140
BbvI GCAGC 3 cut(s) 46, 645, 872
BccI CCATC 5 cut(s) 481, 566, 725, 877, 960
BceAI ACGGC 2 cut(s) 91, 258
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 452, 916
BfaI CTAG 1 cut(s) 192
BisI GCNGC 3 cut(s) 60, 634, 861
BlsI GCNGC 3 cut(s) 61, 635, 862
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 2 cut(s) 231, 337
BmgT120I GGNCC 3 cut(s) 202, 231, 337
BmiI GGNNCC 3 cut(s) 232, 339, 892
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 5 cut(s) 163, 292, 808, 830, 889
BmtI GCTAGC 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 4 cut(s) 330, 456, 678, 711
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BsaHI GRCGYC 1 cut(s) 742
BsaJI CCNNGG 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 772, 802
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 2 cut(s) 4, 31
Bse1I ACTGG 2 cut(s) 232, 295
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 4 cut(s) 451, 664, 718, 736
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 9 cut(s) 158, 168, 301, 302, 360, 447, 576, 801, 921
BseNI ACTGG 2 cut(s) 232, 295
BseRI GAGGAG 6 cut(s) 452, 455, 640, 793, 796, 862
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 3 cut(s) 46, 645, 872
BseYI CCCAGC 1 cut(s) 394
BsgI GTGCAG 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 904
BshFI GGCC 3 cut(s) 8, 204, 273
BsiHKAI GWGCWC 2 cut(s) 51, 140
BsiSI CCGG 2 cut(s) 5, 32
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 452, 916
BsmBI CGTCTC 1 cut(s) 916
BsnI GGCC 3 cut(s) 8, 204, 273
Bsp1286I GDGCHC 2 cut(s) 51, 140
Bsp143I GATC 2 cut(s) 103, 926
BspACI CCGC 3 cut(s) 12, 838, 904
BspANI GGCC 3 cut(s) 8, 204, 273
BspCNI CTCAG 9 cut(s) 157, 169, 300, 303, 361, 448, 575, 802, 922
BspFNI CGCG 1 cut(s) 904
BspLI GGNNCC 3 cut(s) 232, 339, 892
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 1 cut(s) 98
BspQI GCTCTTC 2 cut(s) 145, 932
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 2 cut(s) 4, 31
BsrI ACTGG 2 cut(s) 232, 295
BssAI RCCGGY 2 cut(s) 4, 31
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 2 cut(s) 103, 926
BssNI GRCGYC 1 cut(s) 742
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 5 cut(s) 145, 599, 617, 752, 932
BstACI GRCGYC 1 cut(s) 742
BstC8I GCNNGC 5 cut(s) 6, 29, 33, 193, 259
BstDEI CTNAG 9 cut(s) 144, 177, 287, 311, 369, 456, 562, 810, 930
BstF5I GGATG 4 cut(s) 451, 664, 718, 736
BstFNI CGCG 1 cut(s) 904
BstHHI GCGC 1 cut(s) 904
BstKTI GATC 2 cut(s) 106, 929
BstMAI GTCTC 2 cut(s) 452, 916
BstMBI GATC 2 cut(s) 103, 926
BstMWI GCNNNNNNNGC 6 cut(s) 201, 245, 254, 297, 353, 362
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 51
BstUI CGCG 1 cut(s) 904
BstV1I GCAGC 3 cut(s) 46, 645, 872
BstV2I GAAGAC 4 cut(s) 330, 456, 678, 711
BsuRI GGCC 3 cut(s) 8, 204, 273
BtsCI GGATG 4 cut(s) 451, 664, 718, 736
BtsIMutI CAGTG 2 cut(s) 302, 453
Cac8I GCNNGC 5 cut(s) 6, 29, 33, 193, 259
CaiI CAGNNNCTG 2 cut(s) 176, 590
CfoI GCGC 1 cut(s) 904
Cfr10I RCCGGY 2 cut(s) 4, 31
Cfr13I GGNCC 3 cut(s) 202, 231, 337
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 2 cut(s) 28, 647
DdeI CTNAG 9 cut(s) 144, 177, 287, 311, 369, 456, 562, 810, 930
DpnI GATC 2 cut(s) 105, 928
DpnII GATC 2 cut(s) 103, 926
DrdI GACNNNNNNGTC 1 cut(s) 840
DseDI GACNNNNNNGTC 1 cut(s) 840
EaeI YGGCCR 2 cut(s) 6, 271
Eam1104I CTCTTC 5 cut(s) 145, 599, 617, 752, 932
EarI CTCTTC 5 cut(s) 145, 599, 617, 752, 932
Ecl136II GAGCTC 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 2 cut(s) 231, 337
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 2 cut(s) 687, 846
EcoICRI GAGCTC 1 cut(s) 138
EcoO109I RGGNCCY 2 cut(s) 202, 337
EcoRII CCWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 823
EcoT38I GRGCYC 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 916
FaeI CATG 2 cut(s) 31, 650
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FatI CATG 2 cut(s) 27, 646
FauI CCCGC 1 cut(s) 897
FauNDI CATATG 2 cut(s) 80, 187
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 3 cut(s) 60, 634, 861
FokI GGATG 4 cut(s) 458, 671, 725, 743
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 60, 634, 861
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 903
GluI GCNGC 3 cut(s) 60, 634, 861
GsaI CCCAGC 1 cut(s) 398
HaeIII GGCC 3 cut(s) 8, 204, 273
HapII CCGG 2 cut(s) 5, 32
HhaI GCGC 1 cut(s) 904
Hin1I GRCGYC 1 cut(s) 742
Hin1II CATG 2 cut(s) 31, 650
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HincII GTYRAC 1 cut(s) 746
HindII GTYRAC 1 cut(s) 746
HpaII CCGG 2 cut(s) 5, 32
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 3 cut(s) 49, 737, 746
Hpy188III TCNNGA 1 cut(s) 956
Hpy8I GTNNAC 3 cut(s) 49, 737, 746
Hpy99I CGWCG 3 cut(s) 744, 747, 750
HpyAV CCTTC 8 cut(s) 12, 74, 122, 328, 606, 699, 760, 906
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 742
HpyCH4V TGCA 6 cut(s) 49, 92, 113, 261, 300, 821
HpyF10VI GCNNNNNNNGC 6 cut(s) 201, 245, 254, 297, 353, 362
HpyF3I CTNAG 9 cut(s) 144, 177, 287, 311, 369, 456, 562, 810, 930
HpySE526I ACGT 1 cut(s) 742
Hsp92I GRCGYC 1 cut(s) 742
Hsp92II CATG 2 cut(s) 31, 650
HspAI GCGC 1 cut(s) 902
KroI GCCGGC 2 cut(s) 4, 31
KroNI GCCGGC 2 cut(s) 6, 33
Kzo9I GATC 2 cut(s) 103, 926
LguI GCTCTTC 2 cut(s) 145, 932
LmnI GCTCC 2 cut(s) 849, 896
Lsp1109I GCAGC 3 cut(s) 46, 645, 872
LweI GCATC 5 cut(s) 163, 292, 808, 830, 889
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 742
MalI GATC 2 cut(s) 105, 928
MboI GATC 2 cut(s) 103, 926
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 51, 140
MluCI AATT 2 cut(s) 93, 151
MlyI GAGTC 4 cut(s) 554, 656, 725, 821
MmeI TCCRAC 1 cut(s) 824
Mph1103I ATGCAT 1 cut(s) 823
MroNI GCCGGC 2 cut(s) 4, 31
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 2 cut(s) 318, 530
MslI CAYNNNNRTG 3 cut(s) 54, 954, 957
MspI CCGG 2 cut(s) 5, 32
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 904
MwoI GCNNNNNNNGC 6 cut(s) 201, 245, 254, 297, 353, 362
NaeI GCCGGC 2 cut(s) 6, 33
NdeI CATATG 2 cut(s) 80, 187
NdeII GATC 2 cut(s) 103, 926
NgoMIV GCCGGC 2 cut(s) 4, 31
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 31, 650
NlaIV GGNNCC 3 cut(s) 232, 339, 892
NsiI ATGCAT 1 cut(s) 823
NspI RCATGY 1 cut(s) 31
OliI CACNNNNGTG 2 cut(s) 54, 954
PaeI GCATGC 1 cut(s) 31
PciSI GCTCTTC 2 cut(s) 145, 932
PcsI WCGNNNNNNNCGW 1 cut(s) 745
PdiI GCCGGC 2 cut(s) 6, 33
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 8 cut(s) 181, 467, 479, 587, 653, 806, 875, 881
PkrI GCNGC 3 cut(s) 61, 635, 862
PleI GAGTC 4 cut(s) 554, 656, 724, 820
PpsI GAGTC 4 cut(s) 554, 656, 724, 820
PpuMI RGGWCCY 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 232, 339, 892
PspPI GGNCC 3 cut(s) 202, 231, 337
PspPPI RGGWCCY 1 cut(s) 337
PstNI CAGNNNCTG 2 cut(s) 176, 590
RseI CAYNNNNRTG 3 cut(s) 54, 954, 957
SacI GAGCTC 1 cut(s) 140
SalI GTCGAC 1 cut(s) 744
SapI GCTCTTC 2 cut(s) 145, 932
SaqAI TTAA 2 cut(s) 318, 530
SatI GCNGC 3 cut(s) 60, 634, 861
Sau3AI GATC 2 cut(s) 103, 926
Sau96I GGNCC 3 cut(s) 202, 231, 337
SchI GAGTC 4 cut(s) 554, 656, 725, 821
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 51, 140
SfaNI GCATC 5 cut(s) 163, 292, 808, 830, 889
SgrDI CGTCGACG 1 cut(s) 744
SinI GGWCC 2 cut(s) 231, 337
SmiMI CAYNNNNRTG 3 cut(s) 54, 954, 957
SphI GCATGC 1 cut(s) 31
Sse9I AATT 2 cut(s) 93, 151
SsiI CCGC 3 cut(s) 12, 838, 904
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 745
TaqI TCGA 2 cut(s) 617, 745
TasI AATT 2 cut(s) 93, 151
TfiI GAWTC 8 cut(s) 181, 467, 479, 587, 653, 806, 875, 881
Tru1I TTAA 2 cut(s) 318, 530
Tru9I TTAA 2 cut(s) 318, 530
TscAI CASTG 2 cut(s) 302, 460
TseI GCWGC 3 cut(s) 59, 633, 860
TspDTI ATGAA 1 cut(s) 462
TspGWI ACGGA 1 cut(s) 715
TspRI CASTG 2 cut(s) 302, 460
VneI GTGCAC 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 231, 337
XapI RAATTY 1 cut(s) 151
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 192
ZraI GACGTC 1 cut(s) 743
Zsp2I ATGCAT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.