Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003424

Physical Location & Seq

Genomic Coordinates Forward (+)

7796110 .. 7797099

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1093300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCCTGCCACAGCGGGAAGGGTTCGCATGCCCGCAAACAATCGGGTACACAGTAGTGCCGCCCTTCAGACCCACGGTATATGGCAGAGTGCAATTGGGTATGACCCCTATGCACCCAACAAAGATGACACCAAGAGCACTGCGCAACCCAATGTGTCGAACGATGAACCGGATGGTGAGAATGCATATGCTAGCTTCCAGGGCCTCCTTGCGCTTGCCCGTATAACTGGGTCCAGCGCTGACGAGACTCGTGGGTCTTGCAGCAGGTGCGGCCGTGTTGGGCACCTCAAGTTTCAGTGCAGGAACTTTCTGAGTGTTAAGGAAGATAAGGAGAGAGAGCCCGAAGGGATTCAGGGTGATGTTGCATCAGAATTGGCTAGGTTGAAGAGGAAGATTGGTAGGACCAGTGGTAAAAATGTGGAAGAGAGTGAGGAGAGTGAGGATGAGGATGAAGACAGTGAGAGCGAGGATTCGGATTATGATTCAGAGATTGAGAAGATCATTGCTCAAAAAAATGGGTTAAAGGTTGGTAAAAAGGAGAAGTCAAAAAAGAAGAATGATGACTCAGATGATGATGGGTCAGATTCGGATTCTGGGAAGAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGGAGCAAGAGGAAACATGCTGATGATTCAGATGATTCAGATGAAGGTAGGAAAAGAAAAAGGAAGGAGAAGCGTAGGAAGAGGGATGAGTCCTCGGATGAGGACGGTGAGCGTCGGCGGCGGCACAGGAAAAGTAGGAAGGAGAAGAGGAGGAGGAGAAGTCATCGGCATTCAGATGATTCTGAATCTGATTCGTCTGATGATTCTCGTAGACACTGCAGTCGGAGGAGCAGGAAGGCAGCAACACCATCTGATTCTGAAGATGATTCACGCGTAGGTAGGGGCAGGAAGCGGTCTGAGAAGAAGAGCAGCAAACGCCATCACAAGGATGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

323

Amino Acids

36.66

Weight (kDa)

9.49

Isoelectric Point (pI)

87.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28910 AT2G28910 AT2G28910
fragaria_vesca	FvH4_3g36111 FvH4_3g36111
malus_domestica	MD03G1093300.v1.1 MD11G1107700.v1.1 MD11G1108100.v1.1
prunus_persica	Prupe.6G077300_v2.0.a1
pyrus_communis	pycom03g07480 pycom11g08930
rosa_chinensis	RchiOBHm_Chr5g0064541 RchiOBHm_Chr5g0064551 RchiOBHm_Chr5g0064811 RchiOBHm_Chr5g0064841
rosa_laevigata	RLG00000001342 RLG00000035732 RLG00000035734 RLG00000035736
rosa_roxburghii	Rroxscaffold_1G00016450 Rroxscaffold_1G00016480 Rroxscaffold_6G00399790 Rroxscaffold_6G00400120
rosa_rugosa	Rorug05G0366000 Rorug05G0366100 Rorug05G0366500
rosa_samantha	Rh3CG275300 Rh3DG272600 Rh5AG424000 Rh5BG439400 Rh5CG462000 Rh5CG462100 Rh5DG452700 Rh5DG452900
rosa_wichuraiana	Rw5G039860 Rw5G039880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
AasI	GACNNNNNNGTC	2 cut(s)	253, 849
Acc16I	TGCGCA	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	841
AccII	CGCG	1 cut(s)	903
AciI	CCGC	7 cut(s)	14, 33, 60, 270, 748, 751, 922
AcoI	YGGCCR	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	50, 909
AfaI	GTAC	1 cut(s)	48
AfeI	AGCGCT	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	955
AflIII	ACRYGT	1 cut(s)	901
AgsI	TTSAA	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	198
AleI	CACNNNNGTG	1 cut(s)	54
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	238
AoxI	GGCC	2 cut(s)	202, 271
ApeKI	GCWGC	3 cut(s)	261, 869, 939
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	3 cut(s)	145, 214, 239
AspS9I	GGNCC	3 cut(s)	202, 231, 402
AsuHPI	GGTGA	3 cut(s)	188, 368, 749
AsuNHI	GCTAGC	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	231, 402
BaeGI	GKGCMC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	342
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	273, 881, 951
BccI	CCATC	4 cut(s)	167, 569, 886, 957
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	192, 378
BfmI	CTRYAG	1 cut(s)	847
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	7 cut(s)	60, 262, 271, 749, 752, 870, 940
BlsI	GCNGC	7 cut(s)	61, 263, 272, 750, 753, 871, 941
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	2 cut(s)	231, 402
BmgT120I	GGNCC	3 cut(s)	202, 231, 402
BmiI	GGNNCC	2 cut(s)	232, 284
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	374
BmtI	GCTAGC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	73, 199, 723
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	775, 805
Bsc4I	CCNNNNNNNGG	1 cut(s)	955
Bse1I	ACTGG	2 cut(s)	232, 405
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	73, 199, 723
BseGI	GGATG	6 cut(s)	178, 448, 454, 721, 733, 964
BseLI	CCNNNNNNNGG	1 cut(s)	955
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	3 cut(s)	302, 579, 918
BseNI	ACTGG	2 cut(s)	232, 405
BseRI	GAGGAG	7 cut(s)	446, 643, 646, 793, 796, 799, 871
BseSI	GKGCMC	1 cut(s)	285
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	3 cut(s)	273, 881, 951
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	903
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	204, 273
BshNI	GGYRCC	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	955
BsmAI	GTCTC	1 cut(s)	239
BsmI	GAATGC	2 cut(s)	187, 799
BsnI	GGCC	2 cut(s)	204, 273
Bsp1286I	GDGCHC	3 cut(s)	140, 285, 342
Bsp143I	GATC	1 cut(s)	498
BspACI	CCGC	7 cut(s)	14, 33, 60, 270, 748, 751, 922
BspANI	GGCC	2 cut(s)	204, 273
BspCNI	CTCAG	3 cut(s)	303, 578, 919
BspFNI	CGCG	1 cut(s)	903
BspLI	GGNNCC	2 cut(s)	232, 284
BspMAI	CTGCAG	1 cut(s)	851
BspMI	ACCTGC	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	195
BspQI	GCTCTTC	1 cut(s)	929
BspT107I	GGYRCC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	232, 405
BssECI	CCNNGG	3 cut(s)	73, 199, 723
BssMI	GATC	1 cut(s)	498
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	4 cut(s)	53, 77, 458, 737
Bst6I	CTCTTC	8 cut(s)	380, 417, 593, 602, 620, 704, 770, 929
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	5 cut(s)	6, 29, 33, 193, 216
BstDEI	CTNAG	3 cut(s)	311, 565, 927
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	6 cut(s)	178, 448, 454, 721, 733, 964
BstFNI	CGCG	1 cut(s)	903
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	3 cut(s)	145, 214, 239
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	498
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	5 cut(s)	201, 267, 270, 748, 945
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	2 cut(s)	31, 650
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	847
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	1 cut(s)	903
BstV1I	GCAGC	3 cut(s)	273, 881, 951
BstV2I	GAAGAC	1 cut(s)	459
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	204, 273
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	6 cut(s)	178, 448, 454, 721, 733, 964
BtsI	GCAGTG	2 cut(s)	138, 844
BtsIMutI	CAGTG	5 cut(s)	138, 302, 412, 463, 844
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	5 cut(s)	6, 29, 33, 193, 216
CfoI	GCGC	3 cut(s)	145, 214, 239
Cfr13I	GGNCC	3 cut(s)	202, 231, 402
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	28, 647
CviJI	RGCY	5 cut(s)	195, 204, 273, 340, 377
CviKI_1	RGCY	5 cut(s)	195, 204, 273, 340, 377
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	311, 565, 927
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
DrdI	GACNNNNNNGTC	2 cut(s)	253, 849
DseDI	GACNNNNNNGTC	2 cut(s)	253, 849
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	8 cut(s)	380, 417, 593, 602, 620, 704, 770, 929
EarI	CTCTTC	8 cut(s)	380, 417, 593, 602, 620, 704, 770, 929
EclXI	CGGCCG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	2 cut(s)	231, 402
Eco47III	AGCGCT	1 cut(s)	238
Eco52I	CGGCCG	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	50, 909
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	342
FaeI	CATG	2 cut(s)	31, 650
FatI	CATG	2 cut(s)	27, 646
FauI	CCCGC	2 cut(s)	7, 40
FauNDI	CATATG	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	841
Fnu4HI	GCNGC	7 cut(s)	60, 262, 271, 749, 752, 870, 940
FokI	GGATG	5 cut(s)	185, 455, 461, 728, 740
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	7 cut(s)	60, 262, 271, 749, 752, 870, 940
FspBI	CTAG	2 cut(s)	192, 378
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	3 cut(s)	144, 213, 238
GluI	GCNGC	7 cut(s)	60, 262, 271, 749, 752, 870, 940
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	204, 273
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	731
HhaI	GCGC	3 cut(s)	145, 214, 239
Hin1II	CATG	2 cut(s)	31, 650
Hin6I	GCGC	3 cut(s)	143, 212, 237
HinP1I	GCGC	3 cut(s)	143, 212, 237
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	3 cut(s)	188, 368, 749
Hpy166II	GTNNAC	2 cut(s)	49, 842
Hpy8I	GTNNAC	2 cut(s)	49, 842
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	8 cut(s)	12, 74, 338, 609, 668, 688, 763, 859
HpyCH4III	ACNGT	4 cut(s)	53, 77, 458, 737
HpyCH4V	TGCA	7 cut(s)	92, 113, 185, 261, 300, 365, 849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	201, 267, 270, 748, 945
HpyF3I	CTNAG	3 cut(s)	311, 565, 927
Hsp92II	CATG	2 cut(s)	31, 650
HspAI	GCGC	3 cut(s)	143, 212, 237
Kzo9I	GATC	1 cut(s)	498
LguI	GCTCTTC	1 cut(s)	929
LmnI	GCTCC	2 cut(s)	633, 858
Lsp1109I	GCAGC	3 cut(s)	273, 881, 951
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	2 cut(s)	192, 378
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	3 cut(s)	140, 285, 342
MluCI	AATT	2 cut(s)	93, 371
MluI	ACGCGT	1 cut(s)	901
MlyI	GAGTC	3 cut(s)	241, 557, 728
MmeI	TCCRAC	1 cut(s)	833
Mph1103I	ATGCAT	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	318, 521
MslI	CAYNNNNRTG	4 cut(s)	54, 651, 804, 957
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	2 cut(s)	187, 799
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	903
MwoI	GCNNNNNNNGC	5 cut(s)	201, 267, 270, 748, 945
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	1 cut(s)	498
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	31, 650
NlaIV	GGNNCC	2 cut(s)	232, 284
NsbI	TGCGCA	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	2 cut(s)	31, 650
OliI	CACNNNNGTG	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	929
PctI	GAATGC	2 cut(s)	187, 799
PdmI	GAANNNNTTC	1 cut(s)	348
PkrI	GCNGC	7 cut(s)	61, 263, 272, 750, 753, 871, 941
PleI	GAGTC	3 cut(s)	241, 557, 727
PpsI	GAGTC	3 cut(s)	241, 557, 727
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	232, 284
PspPI	GGNCC	3 cut(s)	202, 231, 402
PstI	CTGCAG	1 cut(s)	851
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	4 cut(s)	54, 651, 804, 957
SapI	GCTCTTC	1 cut(s)	929
SaqAI	TTAA	2 cut(s)	318, 521
SatI	GCNGC	7 cut(s)	60, 262, 271, 749, 752, 870, 940
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	3 cut(s)	202, 231, 402
SchI	GAGTC	3 cut(s)	241, 557, 728
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	3 cut(s)	140, 285, 342
SetI	ASST	8 cut(s)	197, 269, 288, 383, 528, 620, 679, 910
SfaNI	GCATC	1 cut(s)	374
SfcI	CTRYAG	1 cut(s)	847
SinI	GGWCC	2 cut(s)	231, 402
SmiMI	CAYNNNNRTG	4 cut(s)	54, 651, 804, 957
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	2 cut(s)	93, 371
SsiI	CCGC	7 cut(s)	14, 33, 60, 270, 748, 751, 922
SspMI	CTAG	2 cut(s)	192, 378
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	4 cut(s)	53, 77, 458, 737
TaqI	TCGA	2 cut(s)	158, 620
TasI	AATT	2 cut(s)	93, 371
TauI	GCSGC	4 cut(s)	62, 273, 751, 754
Tru1I	TTAA	2 cut(s)	318, 521
Tru9I	TTAA	2 cut(s)	318, 521
TscAI	CASTG	5 cut(s)	145, 302, 412, 463, 851
TseI	GCWGC	3 cut(s)	261, 869, 939
TspDTI	ATGAA	3 cut(s)	180, 465, 687
TspRI	CASTG	5 cut(s)	145, 302, 412, 463, 851
VpaK11BI	GGWCC	2 cut(s)	231, 402
XceI	RCATGY	2 cut(s)	31, 650
XmiI	GTMKAC	1 cut(s)	841
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	192, 378
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.