Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003424

Physical Location & Seq

Genomic Coordinates Reverse (-)

14358048 .. 14362677

Gene Structure 4630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTAGTAATGAACCAGATTATGAAGGCCATAGCCATAGCCATTTCAAAGATGCAAAAAATGGTTATGGGTGACATGCCTTCTCAATATGATGATGAAGAAAAGAAAAATGCTAACAGGACAGAAACTTTGCCCCTTCAAACTCATGGCATATGGCATAGTACAATTGGGTCTGATCCCTCTGCACCCACCAAAGAGGAAAGTAAGAGCTCTTCTCAGCCGAATTTGCCAAACTCTGAGCAAGATGCTGAGAATCCATATGCTAGCTTCCAACGCCTCCTGGCCCTTGCCCTTATAGCCGGGTCCAATGCTGATGAGACTCGTGGGGCGTCCAAGAGGTGTGGCCGTGTTGGGCATCTCAGCTTCAAGTGCAGGAACTTTCAGAGTGTTAAGGAAGACAAGGGGAGAGACCCAGAAGCTATTCAGGCTGATAGTGCTTATGAGTTGAGTAAGTTTAGGAGGAAGTTGGGTAAGGGGATTAGGAAAAATGTGTTTGAGACTGATAGTGTGGAGGAGGATGAAGACACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

5.72

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28910 AT2G28910 AT2G28910
fragaria_vesca	FvH4_3g36111 FvH4_3g36111
malus_domestica	MD03G1093300.v1.1 MD11G1107700.v1.1 MD11G1108100.v1.1
prunus_persica	Prupe.6G077300_v2.0.a1
pyrus_communis	pycom03g07480 pycom11g08930
rosa_chinensis	RchiOBHm_Chr5g0064541 RchiOBHm_Chr5g0064551 RchiOBHm_Chr5g0064811 RchiOBHm_Chr5g0064841
rosa_laevigata	RLG00000001342 RLG00000035732 RLG00000035734 RLG00000035736
rosa_roxburghii	Rroxscaffold_1G00016450 Rroxscaffold_1G00016480 Rroxscaffold_6G00399790 Rroxscaffold_6G00400120
rosa_rugosa	Rorug05G0366000 Rorug05G0366100 Rorug05G0366500
rosa_samantha	Rh3CG275300 Rh3DG272600 Rh5AG424000 Rh5BG439400 Rh5CG462000 Rh5CG462100 Rh5DG452700 Rh5DG452900
rosa_wichuraiana	Rw5G039860 Rw5G039880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	48, 140, 367
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	4 cut(s)	210, 267, 363, 419
AluI	AGCT	4 cut(s)	210, 267, 363, 419
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	3 cut(s)	311, 402, 491
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	3 cut(s)	27, 282, 343
ApoI	RAATTY	1 cut(s)	223
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
Asp700I	GAANNNNTTC	1 cut(s)	420
AspS9I	GGNCC	2 cut(s)	283, 303
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	83
AsuNHI	GCTAGC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	196, 228
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	2 cut(s)	402, 528
Bbv12I	GWGCWC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	3 cut(s)	311, 402, 491
BfaI	CTAG	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	281, 301
Bme18I	GGWCC	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	283, 303
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	281, 301
BmsI	GCATC	3 cut(s)	42, 235, 364
BmtI	GCTAGC	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	402, 528
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpuMI	CCSGG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	523
BseMII	CTCAG	4 cut(s)	228, 230, 240, 373
BseRI	GAGGAG	1 cut(s)	527
BsgI	GTGCAG	2 cut(s)	168, 391
BshFI	GGCC	3 cut(s)	29, 284, 345
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	300
BsmAI	GTCTC	3 cut(s)	311, 402, 491
BsnI	GGCC	3 cut(s)	29, 284, 345
Bso31I	GGTCTC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	3 cut(s)	29, 284, 345
BspCNI	CTCAG	4 cut(s)	229, 229, 241, 372
BspLI	GGNNCC	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	402
BssMI	GATC	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	329
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	4 cut(s)	216, 237, 249, 359
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	3 cut(s)	311, 402, 491
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	6 cut(s)	226, 273, 296, 369, 425, 434
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	279, 299
BstV2I	GAAGAC	2 cut(s)	402, 528
BsuRI	GGCC	3 cut(s)	29, 284, 345
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	283, 303
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	162
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	2 cut(s)	76, 146
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	4 cut(s)	216, 237, 249, 359
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	212
FaeI	CATG	2 cut(s)	79, 149
FatI	CATG	2 cut(s)	75, 145
FauNDI	CATATG	2 cut(s)	152, 259
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	29, 284, 345
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	79, 149
HinfI	GANTC	2 cut(s)	253, 319
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	175, 238, 384
HpyAV	CCTTC	3 cut(s)	19, 90, 146
HpyCH4V	TGCA	3 cut(s)	55, 185, 372
HpyF10VI	GCNNNNNNNGC	6 cut(s)	226, 273, 296, 369, 425, 434
HpyF3I	CTNAG	4 cut(s)	216, 237, 249, 359
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	79, 149
Kzo9I	GATC	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	29, 103, 266, 293, 313, 358, 410, 426
LweI	GCATC	3 cut(s)	42, 235, 364
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	4 cut(s)	110, 204, 407, 533
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	2 cut(s)	165, 223
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	7 cut(s)	190, 190, 287, 330, 453, 505, 508
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	1 cut(s)	390
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	281, 301
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	6 cut(s)	226, 273, 296, 369, 425, 434
NciI	CCSGG	1 cut(s)	301
NdeI	CATATG	2 cut(s)	152, 259
NdeII	GATC	1 cut(s)	175
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	2 cut(s)	79, 149
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	2 cut(s)	283, 303
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	390
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	2 cut(s)	283, 303
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	281, 301
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	5 cut(s)	212, 269, 341, 365, 421
SfaNI	GCATC	3 cut(s)	42, 235, 364
SinI	GGWCC	1 cut(s)	303
Sse9I	AATT	2 cut(s)	165, 223
SspMI	CTAG	1 cut(s)	264
SstI	GAGCTC	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	279, 299
TasI	AATT	2 cut(s)	165, 223
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	4 cut(s)	26, 38, 111, 534
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.