Rroxscaffold_1G00016450

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003424
Physical Location & Seq
Forward (+)
20467711 .. 20469038
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016450.1

Sequence Viewer

Length: 744 bp
ATGCCGGCCACCGCAGGAAGGGTTCGCATGCCCCCAAACAATCGGGTACACAGTAGTGTTGCCCTTCAAACTCATGGTATATGGCAGAGTACAATTGGGTACGATCCCTATGCACCTCAGCCGAATTTGTCAAACTCAAAACCGGATGCTGAGAATGCATATGCTAGCTATCAAGGCCTTCTCCAACTCGCTCGTATAACTGGGCCGAATTCTGACGAGGTTCGTGGGGCGTGCAAGAGGTGTGGCCGGGTTGGGCACCTCACCTATCAATGTAGGAATTTTCTGAGTGTTAAGGACAAGGAGAAGGAGGACCCTGAAGCTATCCAGGCTGATGTTGCTTCTGAGTTGGGCAAGTTGAAGGGGAAGCTGGGTAAAGCGAAGGGAAAAGATGTTGTTAAGGCTGATAGTGAGGAGGAGGATGAAGACATTGAGAGTTCAGATTCGGACTATGATTCTGATATGGAGAGGCTCATTGCTCAAAGATATGGGCAAAAGAGTTTTCGAAAGGAGAAGCTGAAAAAGAAGAACAAGGACTCGGATGTTGATGGTTCAGATACAGATTCTGGGGAGAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGAAGCAGAAAGAGGAAACATGATGATTCAGATGATTCTGAAAGGGATAGGAAGAAAAGAAGAAAGGAGAAACGGAGAAAGAGAGATGAGTCCTCGGATGAGGATGATAAACGACCTCGACGACATAGGAAGAGTAGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

247

Amino Acids

28.25

Weight (kDa)

9.65

Isoelectric Point (pI)

62.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 74 - 93 1.3e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AciI CCGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 6, 244
AcsI RAATTY 3 cut(s) 124, 208, 277
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 3 cut(s) 48, 91, 101
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 68, 358
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 4 cut(s) 168, 320, 367, 514
AluI AGCT 4 cut(s) 168, 320, 367, 514
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 4 cut(s) 6, 175, 203, 244
ApoI RAATTY 3 cut(s) 124, 208, 277
AspS9I GGNCC 2 cut(s) 203, 310
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 502
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 429
BbvCI CCTCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 539
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 248, 326
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 203, 310
BmiI GGNNCC 2 cut(s) 257, 312
BmrFI CCNGG 2 cut(s) 248, 326
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 502
BpuMI CCSGG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 693
BseGI GGATG 5 cut(s) 151, 424, 544, 703, 709
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 4 cut(s) 131, 141, 275, 333
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 3 cut(s) 425, 428, 613
BseSI GKGCMC 1 cut(s) 258
BseYI CCCAGC 1 cut(s) 367
BshFI GGCC 4 cut(s) 8, 177, 205, 246
BshNI GGYRCC 1 cut(s) 255
BsiSI CCGG 3 cut(s) 5, 143, 247
BslI CCNNNNNNNGG 1 cut(s) 18
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 4 cut(s) 8, 177, 205, 246
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 12
BspANI GGCC 4 cut(s) 8, 177, 205, 246
BspCNI CTCAG 4 cut(s) 130, 142, 276, 334
BspLI GGNNCC 2 cut(s) 257, 312
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 693
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 3 cut(s) 572, 590, 725
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 4 cut(s) 6, 29, 166, 232
BstDEI CTNAG 4 cut(s) 117, 150, 284, 342
BstF5I GGATG 5 cut(s) 151, 424, 544, 703, 709
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 246, 324
BstSLI GKGCMC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 429
BsuRI GGCC 4 cut(s) 8, 177, 205, 246
BtsCI GGATG 5 cut(s) 151, 424, 544, 703, 709
Cac8I GCNNGC 4 cut(s) 6, 29, 166, 232
CaiI CAGNNNCTG 1 cut(s) 563
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 203, 310
Csp6I GTAC 3 cut(s) 47, 90, 100
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 3 cut(s) 28, 74, 620
CviQI GTAC 3 cut(s) 47, 90, 100
DdeI CTNAG 4 cut(s) 117, 150, 284, 342
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 6, 244
Eam1104I CTCTTC 3 cut(s) 572, 590, 725
EarI CTCTTC 3 cut(s) 572, 590, 725
Eco147I AGGCCT 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 3 cut(s) 31, 77, 623
FatI CATG 3 cut(s) 27, 73, 619
FauNDI CATATG 1 cut(s) 160
FokI GGATG 5 cut(s) 158, 431, 551, 710, 716
FspBI CTAG 1 cut(s) 165
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 4 cut(s) 8, 177, 205, 246
HapII CCGG 3 cut(s) 5, 143, 247
Hin1II CATG 3 cut(s) 31, 77, 623
HinfI GANTC 7 cut(s) 440, 452, 533, 560, 626, 635, 689
HpaII CCGG 3 cut(s) 5, 143, 247
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 723
HpyAV CCTTC 7 cut(s) 12, 74, 188, 298, 352, 373, 579
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 113, 158, 234
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
HpyF3I CTNAG 4 cut(s) 117, 150, 284, 342
Hsp92II CATG 3 cut(s) 31, 77, 623
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 9 cut(s) 18, 156, 186, 260, 311, 327, 338, 353, 549
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 165
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 9 cut(s) 434, 535, 586, 589, 604, 607, 664, 672, 742
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 4 cut(s) 93, 124, 208, 277
MlyI GAGTC 2 cut(s) 527, 698
MmeI TCCRAC 1 cut(s) 208
Mph1103I ATGCAT 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 2 cut(s) 291, 396
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 3 cut(s) 5, 143, 247
MspR9I CCNGG 2 cut(s) 248, 326
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 160
NdeII GATC 1 cut(s) 103
NgoMIV GCCGGC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 3 cut(s) 31, 77, 623
NlaIV GGNNCC 2 cut(s) 257, 312
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 1 cut(s) 31
NspV TTCGAA 1 cut(s) 502
OliI CACNNNNGTG 1 cut(s) 54
PaeI GCATGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PctI GAATGC 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 5 cut(s) 440, 452, 560, 626, 635
PleI GAGTC 2 cut(s) 527, 697
PpsI GAGTC 2 cut(s) 527, 697
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 257, 312
PspPI GGNCC 2 cut(s) 203, 310
PspPPI RGGWCCY 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 563
RsaI GTAC 3 cut(s) 48, 91, 101
RsaNI GTAC 3 cut(s) 47, 90, 100
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 291, 396
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 203, 310
SchI GAGTC 2 cut(s) 527, 698
ScrFI CCNGG 2 cut(s) 248, 326
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 502
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 54
SphI GCATGC 1 cut(s) 31
Sse9I AATT 4 cut(s) 93, 124, 208, 277
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 246, 324
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 3 cut(s) 502, 590, 718
TasI AATT 4 cut(s) 93, 124, 208, 277
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 5 cut(s) 440, 452, 560, 626, 635
Tru1I TTAA 2 cut(s) 291, 396
Tru9I TTAA 2 cut(s) 291, 396
TspDTI ATGAA 1 cut(s) 435
TspGWI ACGGA 1 cut(s) 688
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 3 cut(s) 124, 208, 277
XceI RCATGY 1 cut(s) 31
XspI CTAG 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.