Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003424

Physical Location & Seq

Genomic Coordinates Forward (+)

9504956 .. 9505950

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1107700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGCCTGCCACAGCGGGAAGGGTTCGCATGCCCGCGAACAAGCGGGTACATAGTAGTGCCGCCCTTCAAACCCACGGTATATGGCAGACTGCAATTGGGTATGACCCCTATGCACCCAACAAAGATGATACCAAGAGCTCTGCGCAGCCCAATGTGCCGAATGCTGAACCGGATGGTGAGAATGTATATGTGAGCTTCCGGGCCTCCTTGCTCTTGCCCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

75

Amino Acids

7.98

Weight (kDa)

8.14

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28910 AT2G28910 AT2G28910
fragaria_vesca	FvH4_3g36111 FvH4_3g36111
malus_domestica	MD03G1093300.v1.1 MD11G1107700.v1.1 MD11G1108100.v1.1
prunus_persica	Prupe.6G077300_v2.0.a1
pyrus_communis	pycom03g07480 pycom11g08930
rosa_chinensis	RchiOBHm_Chr5g0064541 RchiOBHm_Chr5g0064551 RchiOBHm_Chr5g0064811 RchiOBHm_Chr5g0064841
rosa_laevigata	RLG00000001342 RLG00000035732 RLG00000035734 RLG00000035736
rosa_roxburghii	Rroxscaffold_1G00016450 Rroxscaffold_1G00016480 Rroxscaffold_6G00399790 Rroxscaffold_6G00400120
rosa_rugosa	Rorug05G0366000 Rorug05G0366100 Rorug05G0366500
rosa_samantha	Rh3CG275300 Rh3DG272600 Rh5AG424000 Rh5BG439400 Rh5CG462000 Rh5CG462100 Rh5DG452700 Rh5DG452900
rosa_wichuraiana	Rw5G039860 Rw5G039880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	144
AccII	CGCG	1 cut(s)	35
AciI	CCGC	4 cut(s)	14, 33, 43, 60
AfaI	GTAC	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	2 cut(s)	138, 195
AluI	AGCT	2 cut(s)	138, 195
Alw21I	GWGCWC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	60, 146
BlsI	GCNGC	2 cut(s)	61, 147
Bme1390I	CCNGG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	170, 199
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	140
BspACI	CCGC	4 cut(s)	14, 33, 43, 60
BspANI	GGCC	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	6, 29, 33
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	3 cut(s)	6, 29, 33
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	4 cut(s)	138, 148, 195, 203
CviKI_1	RGCY	4 cut(s)	138, 148, 195, 203
CviQI	GTAC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	1 cut(s)	31
FaiI	YATR	9 cut(s)	29, 51, 80, 82, 102, 111, 187, 189, 223
FatI	CATG	1 cut(s)	27
FauI	CCCGC	3 cut(s)	7, 36, 40
Fnu4HI	GCNGC	2 cut(s)	60, 146
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	60, 146
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	2 cut(s)	60, 146
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	170, 199
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HpaII	CCGG	2 cut(s)	170, 199
HphI	GGTGA	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	12, 74
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	92, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	1 cut(s)	143
LpnPI	CCDG	3 cut(s)	18, 183, 212
Lsp1109I	GCAGC	1 cut(s)	157
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	1 cut(s)	93
MnlI	CCTC	1 cut(s)	214
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	2 cut(s)	170, 199
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	200
NlaIII	CATG	1 cut(s)	31
NsbI	TGCGCA	1 cut(s)	144
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PctI	GAATGC	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	61, 147
Psp124BI	GAGCTC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	201
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	140
SatI	GCNGC	2 cut(s)	60, 146
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	2 cut(s)	140, 197
SmiMI	CAYNNNNRTG	1 cut(s)	54
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	4 cut(s)	14, 33, 43, 60
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	77
TasI	AATT	1 cut(s)	93
TauI	GCSGC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	145
XceI	RCATGY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.