pycom11g08930

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003424
Physical Location & Seq
Forward (+)
7102822 .. 7103787
966 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08930.1

Sequence Viewer

Length: 966 bp
ATGCCTGCCACAGCGGGAAGGGTTCGCATGCCCGCGAACAATCGGGTACACAGTAGTGCTGCCCTTCAAACCCATGGTATATGGCAGAGTGCAATCGGGTATGACCCCTATGCACCCAACAAAGATGACACCAAGAGCTCTGCGCAGCCCGATGTGTCGAACGCTGATCCGGATGGTGAGAATGCATATGCGAGTTTCCAGGGCCTCCTTGCGCTTGCCCGTATAACTGGGTCCAGCGCCGATGAGACTCGTGGGTCGTGCAGCAGGTGCGGCCGTGTTGGACATCTCAAGTTTCAGTGCAGGAACTTTCTGAGTGTTAAGGAAGATAAAGAGAGAGAGCCGGAAGGGATTCAGGGTGATGTTGCATCAGAGTTGGCTAGGTTGAAGAGGAAGATCGGTAGGAGCAGTGGGAAAAATGTGGATGAGAGTGAGGAGAGTGAGGATGAGGATGAAGACAGTGAGAGCGAGGATTCGGATTATGATTCAGAGATTGAGAAGATCATTGCTCAAAAAAATGGGATAAAGGTTAGTAAAAAGAAGTCGAAAAAGAAGAATGATGACACAGACGATGATGAGTCAGATTCAGATTCTGGGAAGAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGGAGCAGCAAGAGGAAATATGATGATGATTCAGATGAGTCAGATGAAGGTAGGAAGAGAAAAAGGAAGGAGAAGCGGAGGAAGAGGGATGAGTCCTCAGATGAGGATGGCGAGCGTCGGTGGCGGCATAGGAAAAGTAGGAAGGAGAAGAGGAGGAGGAGAAGTCATCGGCATTCAGATGATTCTGAATCTGATTCGTCTGATGATTCTCGTAGACACCGTCAGAGGAGCAGGAAGGCAGCAACACCATCTGATTCTGATGATGATTCACGGGTAGGTAGGGGCAGGAAGCGATCTGAGAAGAAGAGCTTGAAACGCCATCACAGGGATGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

322

Amino Acids

36.72

Weight (kDa)

9.42

Isoelectric Point (pI)

82.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
AasI GACNNNNNNGTC 1 cut(s) 253
Acc16I TGCGCA 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 841
AccII CGCG 1 cut(s) 35
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 5 cut(s) 14, 33, 270, 703, 751
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 271
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 952
AgsI TTSAA 3 cut(s) 68, 385, 940
AjnI CCWGG 1 cut(s) 198
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 2 cut(s) 138, 936
AluI AGCT 2 cut(s) 138, 936
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 2 cut(s) 202, 271
ApeKI GCWGC 5 cut(s) 59, 145, 261, 633, 866
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 3 cut(s) 145, 214, 239
AspS9I GGNCC 2 cut(s) 202, 231
AsuHPI GGTGA 2 cut(s) 188, 368
AvaII GGWCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 140
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 5 cut(s) 46, 157, 273, 645, 878
BccI CCATC 4 cut(s) 167, 728, 883, 954
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 7 cut(s) 60, 146, 262, 271, 634, 752, 867
BlsI GCNGC 7 cut(s) 61, 147, 263, 272, 635, 753, 868
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 2 cut(s) 202, 231
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 374
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 73, 199
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 1 cut(s) 952
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 73, 199
BseGI GGATG 7 cut(s) 178, 427, 448, 454, 721, 739, 961
BseLI CCNNNNNNNGG 1 cut(s) 952
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 3 cut(s) 302, 738, 915
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 7 cut(s) 446, 640, 643, 793, 796, 799, 868
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 5 cut(s) 46, 157, 273, 645, 878
BsgI GTGCAG 2 cut(s) 280, 319
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 204, 273
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 170, 341
BslI CCNNNNNNNGG 1 cut(s) 952
BsmAI GTCTC 1 cut(s) 239
BsmI GAATGC 2 cut(s) 187, 799
BsnI GGCC 2 cut(s) 204, 273
Bsp1286I GDGCHC 1 cut(s) 140
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 4 cut(s) 166, 393, 498, 920
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 5 cut(s) 14, 33, 270, 703, 751
BspANI GGCC 2 cut(s) 204, 273
BspCNI CTCAG 3 cut(s) 303, 737, 916
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 926
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 73, 199
BssMI GATC 4 cut(s) 166, 393, 498, 920
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 3 cut(s) 53, 458, 848
Bst6I CTCTTC 8 cut(s) 380, 590, 599, 617, 677, 704, 770, 926
BstAPI GCANNNNNTGC 1 cut(s) 267
BstC8I GCNNGC 5 cut(s) 6, 29, 33, 216, 740
BstDEI CTNAG 3 cut(s) 311, 724, 924
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 7 cut(s) 178, 427, 448, 454, 721, 739, 961
BstFNI CGCG 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 3 cut(s) 145, 214, 239
BstKTI GATC 4 cut(s) 169, 396, 501, 923
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 4 cut(s) 166, 393, 498, 920
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 4 cut(s) 267, 270, 748, 942
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 198
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 5 cut(s) 46, 157, 273, 645, 878
BstV2I GAAGAC 1 cut(s) 459
BstZI CGGCCG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 204, 273
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 7 cut(s) 178, 427, 448, 454, 721, 739, 961
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 3 cut(s) 302, 412, 463
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 5 cut(s) 6, 29, 33, 216, 740
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 3 cut(s) 145, 214, 239
Cfr13I GGNCC 2 cut(s) 202, 231
CseI GACGC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 47
CviAII CATG 2 cut(s) 28, 74
CviJI RGCY 7 cut(s) 138, 148, 204, 273, 340, 377, 936
CviKI_1 RGCY 7 cut(s) 138, 148, 204, 273, 340, 377, 936
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 3 cut(s) 311, 724, 924
DpnI GATC 4 cut(s) 168, 395, 500, 922
DpnII GATC 4 cut(s) 166, 393, 498, 920
DrdI GACNNNNNNGTC 1 cut(s) 253
DseDI GACNNNNNNGTC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 271
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 8 cut(s) 380, 590, 599, 617, 677, 704, 770, 926
EarI CTCTTC 8 cut(s) 380, 590, 599, 617, 677, 704, 770, 926
Ecl136II GAGCTC 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 231
Eco52I CGGCCG 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 31, 77
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FatI CATG 2 cut(s) 27, 73
FauI CCCGC 2 cut(s) 7, 40
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 7 cut(s) 60, 146, 262, 271, 634, 752, 867
FokI GGATG 6 cut(s) 185, 434, 455, 461, 728, 746
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 7 cut(s) 60, 146, 262, 271, 634, 752, 867
FspBI CTAG 1 cut(s) 378
FspI TGCGCA 1 cut(s) 144
GlaI GCGC 3 cut(s) 144, 213, 238
GluI GCNGC 7 cut(s) 60, 146, 262, 271, 634, 752, 867
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 204, 273
HapII CCGG 2 cut(s) 170, 341
HgaI GACGC 1 cut(s) 731
HhaI GCGC 3 cut(s) 145, 214, 239
Hin1II CATG 2 cut(s) 31, 77
Hin6I GCGC 3 cut(s) 143, 212, 237
HinP1I GCGC 3 cut(s) 143, 212, 237
HpaII CCGG 2 cut(s) 170, 341
HphI GGTGA 2 cut(s) 188, 368
Hpy166II GTNNAC 2 cut(s) 49, 842
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 2 cut(s) 49, 842
Hpy99I CGWCG 1 cut(s) 747
HpyAV CCTTC 8 cut(s) 12, 74, 338, 606, 668, 688, 763, 856
HpyCH4III ACNGT 3 cut(s) 53, 458, 848
HpyCH4V TGCA 6 cut(s) 92, 113, 185, 261, 300, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 267, 270, 748, 942
HpyF3I CTNAG 3 cut(s) 311, 724, 924
Hsp92II CATG 2 cut(s) 31, 77
HspAI GCGC 3 cut(s) 143, 212, 237
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 166, 393, 498, 920
LguI GCTCTTC 1 cut(s) 926
LmnI GCTCC 3 cut(s) 402, 630, 855
Lsp1109I GCAGC 5 cut(s) 46, 157, 273, 645, 878
LweI GCATC 1 cut(s) 374
MaeI CTAG 1 cut(s) 378
MalI GATC 4 cut(s) 168, 395, 500, 922
MboI GATC 4 cut(s) 166, 393, 498, 920
MhlI GDGCHC 1 cut(s) 140
MlyI GAGTC 4 cut(s) 241, 584, 674, 728
MmeI TCCRAC 1 cut(s) 259
Mph1103I ATGCAT 1 cut(s) 187
MroI TCCGGA 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 3 cut(s) 54, 804, 954
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 2 cut(s) 170, 341
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 2 cut(s) 187, 799
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 4 cut(s) 267, 270, 748, 942
NcoI CCATGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 187
NdeII GATC 4 cut(s) 166, 393, 498, 920
NlaIII CATG 2 cut(s) 31, 77
NlaIV GGNNCC 1 cut(s) 232
NsbI TGCGCA 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 54
PaeI GCATGC 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 926
PcsI WCGNNNNNNNCGW 1 cut(s) 844
PctI GAATGC 2 cut(s) 187, 799
PdmI GAANNNNTTC 1 cut(s) 348
PflFI GACNNNGTC 1 cut(s) 846
PkrI GCNGC 7 cut(s) 61, 147, 263, 272, 635, 753, 868
PleI GAGTC 4 cut(s) 241, 583, 673, 727
PpsI GAGTC 4 cut(s) 241, 583, 673, 727
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 202, 231
PstNI CAGNNNCTG 1 cut(s) 590
PsyI GACNNNGTC 1 cut(s) 846
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 3 cut(s) 54, 804, 954
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 926
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 7 cut(s) 60, 146, 262, 271, 634, 752, 867
Sau3AI GATC 4 cut(s) 166, 393, 498, 920
Sau96I GGNCC 2 cut(s) 202, 231
SchI GAGTC 4 cut(s) 241, 584, 674, 728
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 140
SetI ASST 8 cut(s) 140, 269, 383, 528, 617, 679, 907, 938
SfaNI GCATC 1 cut(s) 374
SinI GGWCC 1 cut(s) 231
SmiMI CAYNNNNRTG 3 cut(s) 54, 804, 954
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SphI GCATGC 1 cut(s) 31
SsiI CCGC 5 cut(s) 14, 33, 270, 703, 751
SspMI CTAG 1 cut(s) 378
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 3 cut(s) 53, 458, 848
TaqI TCGA 3 cut(s) 158, 542, 617
TauI GCSGC 2 cut(s) 273, 754
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 3 cut(s) 302, 412, 463
TseI GCWGC 5 cut(s) 59, 145, 261, 633, 866
TspDTI ATGAA 2 cut(s) 465, 687
TspRI CASTG 3 cut(s) 302, 412, 463
Tth111I GACNNNGTC 1 cut(s) 846
VpaK11BI GGWCC 1 cut(s) 231
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.