Rorug05G0366000

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003424
Physical Location & Seq
Reverse (-)
48779952 .. 48784926
4975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0366000.1

Sequence Viewer

Length: 975 bp
ATGGCTTTCAGACTCTCACTCACTTCCACTCCCAATTTTCAAACCTCAACCCCAAAACACCCTCGACAATTACCTCTTCCTCTTCTGGGTTTTCAGTTAAAATGTTGCTCCAATTCCATTTCGCGCTCAAAAGCGGGAGCAGTTCAAGCTGTTCAACAGGAGCAGGAGGTTCTCCAGTCCCCAGCTTCAGATTCCAATTCTGTTCCTGCTTCCTCGTCCAAGCTCGTTCTCGTCGTCGGTGGTACCGGCGGTGTTGGTCAGCTGGTAGTGGCTTCATTGCTGGATCGGAATATCAAGTCTCGCCTACTATTGCGTGACACTGAGAAAGCAACTGCATTATTTGGTGAACATGACCAAGAAACATTGCAGGTATTCAAAGGGGACACTCGCAACCCAGAAGATCTAGATCCATCTATATTTGAGGGAGTCACACATGTGATTTGCTGCACTGGAACTACAGCCTTTCCCTCGAAGCGTTGGAGTGGGGATAATACACCAGAAAAAGTTGATTGGGAGGGTGTGAGAAATTTGGTATCTGCACTGCCTCGGTCACTGAAGAGAATTGTTCTTGTATCATCAGTTGGTGTAACCAAGTTCAATGAACTGCCATGGAGTGTTATGAACCTCTTCGGTGTTCTCAAGTATAAGAAGATGGGGGAAGACGTTCTTTGTAATTCTGGTCTACCATTTACAATAATCAGGGCTGGTAGATTGACAGATGGACCTTACACATCATATGATCTTAATACATTGCTCAAAGCTACAGCTGGCCAACGACGTGCAGTCCTAATAGGTCAAGGAGATACACTAGTTGGAGAGGTTAGCAGACTTGTTGTTGCTGAAGCTTGCATACAGGCGCTGGACATAGAATGCACTGAAGGAAAAATATTTGAAGTCAACTCAGTTGAGGGAGAAGGTCCCGGGAGTGATCAGCAGAAGTGGCGGGAATTATTCAAAGCTGCCCAAGCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

324

Amino Acids

35.1

Weight (kDa)

7.55

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 73 - 151 7e-09 NmrA-like family
Epimerase PF01370 76 - 196 2.6e-07 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 77 - 200 1.9e-06 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 80 - 288 1.6e-26 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 682
AccII CGCG 1 cut(s) 124
AciI CCGC 3 cut(s) 134, 249, 943
AclWI GGATC 2 cut(s) 291, 401
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 4 cut(s) 171, 575, 861, 897
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 7 cut(s) 41, 146, 155, 376, 598, 893, 955
AhdI GACNNNNNGTC 1 cut(s) 782
AhlI ACTAGT 1 cut(s) 808
AjiI CACGTC 1 cut(s) 779
AleI CACNNNNGTG 1 cut(s) 434
AluBI AGCT 9 cut(s) 149, 185, 223, 262, 761, 767, 845, 959, 968
AluI AGCT 9 cut(s) 149, 185, 223, 262, 761, 767, 845, 959, 968
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 2 cut(s) 291, 401
AlwNI CAGNNNCTG 1 cut(s) 859
Ama87I CYCGRG 1 cut(s) 920
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 2 cut(s) 444, 959
ApoI RAATTY 1 cut(s) 526
Asp700I GAANNNNTTC 2 cut(s) 626, 663
Asp718I GGTACC 1 cut(s) 242
AspLEI GCGC 2 cut(s) 126, 859
AspS9I GGNCC 2 cut(s) 722, 917
AsuC2I CCSGG 2 cut(s) 921, 922
AsuHPI GGTGA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 920
AvaII GGWCC 2 cut(s) 722, 917
BaeI ACNNNNGTAYC 2 cut(s) 795, 828
BalI TGGCCA 1 cut(s) 771
BanI GGYRCC 1 cut(s) 242
BarI GAAGNNNNNNTAC 2 cut(s) 834, 866
BbsI GAAGAC 1 cut(s) 666
BbvI GCAGC 2 cut(s) 431, 946
BccI CCATC 3 cut(s) 418, 646, 713
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 2 cut(s) 921, 922
BcoDI GTCTC 1 cut(s) 303
BcuI ACTAGT 1 cut(s) 808
BfaI CTAG 2 cut(s) 404, 809
BfmI CTRYAG 2 cut(s) 456, 762
BfoI RGCGCY 1 cut(s) 860
BfuAI ACCTGC 1 cut(s) 358
BglII AGATCT 1 cut(s) 400
BisI GCNGC 2 cut(s) 445, 960
BlsI GCNGC 2 cut(s) 446, 961
Bme1390I CCNGG 2 cut(s) 921, 922
Bme18I GGWCC 2 cut(s) 722, 917
BmeRI GACNNNNNGTC 1 cut(s) 782
BmeT110I CYCGRG 1 cut(s) 920
BmgBI CACGTC 1 cut(s) 779
BmgT120I GGNCC 2 cut(s) 722, 917
BmiI GGNNCC 2 cut(s) 244, 919
BmrFI CCNGG 2 cut(s) 921, 922
BpiI GAAGAC 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 2 cut(s) 921, 922
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 545, 608, 920
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 175, 454
Bse3DI GCAATG 3 cut(s) 275, 362, 749
Bse8I GATNNNNATC 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 545, 608, 920
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 3 cut(s) 275, 362, 749
BseMII CTCAG 2 cut(s) 312, 915
BseNI ACTGG 2 cut(s) 175, 454
BseXI GCAGC 2 cut(s) 431, 946
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 3 cut(s) 430, 522, 801
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 771
BshNI GGYRCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 920
BsiSI CCGG 2 cut(s) 246, 921
BslFI GGGAC 3 cut(s) 163, 395, 903
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 3 cut(s) 163, 395, 903
BsmI GAATGC 1 cut(s) 875
BsnI GGCC 1 cut(s) 771
BsoBI CYCGRG 1 cut(s) 920
Bsp143I GATC 5 cut(s) 283, 400, 406, 739, 928
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 3 cut(s) 134, 249, 943
BspANI GGCC 1 cut(s) 771
BspCNI CTCAG 2 cut(s) 313, 914
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 244, 919
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 2 cut(s) 291, 401
BspT107I GGYRCC 1 cut(s) 242
BsrDI GCAATG 3 cut(s) 275, 362, 749
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 2 cut(s) 175, 454
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 3 cut(s) 545, 608, 920
BssMI GATC 5 cut(s) 283, 400, 406, 739, 928
BssT1I CCWWGG 1 cut(s) 608
Bst6I CTCTTC 4 cut(s) 81, 87, 551, 632
BstC8I GCNNGC 2 cut(s) 769, 847
BstDEI CTNAG 2 cut(s) 321, 901
BstDSI CCRYGG 1 cut(s) 608
BstFNI CGCG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 860
BstHHI GCGC 2 cut(s) 126, 859
BstKTI GATC 5 cut(s) 286, 403, 409, 742, 931
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 5 cut(s) 283, 400, 406, 739, 928
BstMWI GCNNNNNNNGC 3 cut(s) 146, 940, 965
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 2 cut(s) 919, 920
BstSFI CTRYAG 2 cut(s) 456, 762
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 431, 946
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 2 cut(s) 400, 406
BstYI RGATCY 2 cut(s) 400, 406
BsuRI GGCC 1 cut(s) 771
BtgI CCRYGG 1 cut(s) 608
BtrI CACGTC 1 cut(s) 779
BtsI GCAGTG 1 cut(s) 539
BtsIMutI CAGTG 5 cut(s) 318, 447, 539, 551, 873
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 769, 847
CaiI CAGNNNCTG 1 cut(s) 859
CfoI GCGC 2 cut(s) 126, 859
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 722, 917
Cfr9I CCCGGG 1 cut(s) 920
Csp6I GTAC 1 cut(s) 243
CviAII CATG 3 cut(s) 350, 434, 609
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 2 cut(s) 321, 901
DpnI GATC 5 cut(s) 285, 402, 408, 741, 930
DpnII GATC 5 cut(s) 283, 400, 406, 739, 928
DriI GACNNNNNGTC 1 cut(s) 782
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 4 cut(s) 81, 87, 551, 632
Eam1105I GACNNNNNGTC 1 cut(s) 782
EarI CTCTTC 4 cut(s) 81, 87, 551, 632
Eco130I CCWWGG 1 cut(s) 608
Eco47I GGWCC 2 cut(s) 722, 917
Eco57I CTGAAG 4 cut(s) 171, 575, 861, 897
Eco88I CYCGRG 1 cut(s) 920
EcoO109I RGGNCCY 1 cut(s) 917
EcoT14I CCWWGG 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 3 cut(s) 353, 437, 612
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FaqI GGGAC 3 cut(s) 163, 395, 903
FatI CATG 3 cut(s) 349, 433, 608
FauI CCCGC 2 cut(s) 127, 936
FauNDI CATATG 1 cut(s) 736
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 445, 960
Fsp4HI GCNGC 2 cut(s) 445, 960
FspBI CTAG 2 cut(s) 404, 809
GlaI GCGC 2 cut(s) 125, 858
GluI GCNGC 2 cut(s) 445, 960
GsaI CCCAGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 860
HaeIII GGCC 1 cut(s) 771
HapII CCGG 2 cut(s) 246, 921
HhaI GCGC 2 cut(s) 126, 859
Hin1II CATG 3 cut(s) 353, 437, 612
Hin6I GCGC 2 cut(s) 124, 857
HinP1I GCGC 2 cut(s) 124, 857
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 3 cut(s) 12, 191, 426
HpaII CCGG 2 cut(s) 246, 921
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 3 cut(s) 347, 683, 898
Hpy188I TCNGA 3 cut(s) 11, 190, 288
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 3 cut(s) 347, 683, 898
Hpy99I CGWCG 3 cut(s) 236, 239, 780
HpyAV CCTTC 2 cut(s) 872, 908
HpyCH4IV ACGT 2 cut(s) 663, 778
HpyCH4V TGCA 7 cut(s) 335, 367, 447, 539, 782, 849, 873
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 940, 965
HpyF3I CTNAG 2 cut(s) 321, 901
HpySE526I ACGT 2 cut(s) 663, 778
Hsp92II CATG 3 cut(s) 353, 437, 612
HspAI GCGC 2 cut(s) 124, 857
KpnI GGTACC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 5 cut(s) 283, 400, 406, 739, 928
LmnI GCTCC 3 cut(s) 113, 137, 160
Lsp1109I GCAGC 2 cut(s) 431, 946
MaeI CTAG 2 cut(s) 404, 809
MaeII ACGT 2 cut(s) 663, 778
MaeIII GTNAC 4 cut(s) 314, 427, 549, 586
MalI GATC 5 cut(s) 285, 402, 408, 741, 930
MboI GATC 5 cut(s) 283, 400, 406, 739, 928
MboII GAAGA 7 cut(s) 68, 74, 410, 568, 619, 661, 671
MflI RGATCY 2 cut(s) 400, 406
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 8 cut(s) 34, 68, 112, 196, 526, 561, 673, 947
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 2 cut(s) 6, 435
MmeI TCCRAC 2 cut(s) 458, 793
Mox20I TGGCCA 1 cut(s) 771
MroXI GAANNNNTTC 2 cut(s) 626, 663
MscI TGGCCA 1 cut(s) 771
MseI TTAA 2 cut(s) 98, 744
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 262, 767
MspI CCGG 2 cut(s) 246, 921
MspR9I CCNGG 2 cut(s) 921, 922
Mva1269I GAATGC 1 cut(s) 875
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 146, 940, 965
NciI CCSGG 2 cut(s) 921, 922
NcoI CCATGG 1 cut(s) 608
NdeI CATATG 1 cut(s) 736
NdeII GATC 5 cut(s) 283, 400, 406, 739, 928
NlaIII CATG 3 cut(s) 353, 437, 612
NlaIV GGNNCC 2 cut(s) 244, 919
NmuCI GTSAC 3 cut(s) 314, 427, 549
NspI RCATGY 1 cut(s) 437
OliI CACNNNNGTG 1 cut(s) 434
PciI ACATGT 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 875
PdmI GAANNNNTTC 2 cut(s) 626, 663
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 446, 961
PleI GAGTC 2 cut(s) 6, 434
PpsI GAGTC 2 cut(s) 6, 434
PpuMI RGGWCCY 1 cut(s) 917
PscI ACATGT 1 cut(s) 433
Psp5II RGGWCCY 1 cut(s) 917
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 244, 919
PspPI GGNCC 2 cut(s) 722, 917
PspPPI RGGWCCY 1 cut(s) 917
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 2 cut(s) 400, 406
PvuII CAGCTG 2 cut(s) 262, 767
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 2 cut(s) 98, 744
SatI GCNGC 2 cut(s) 445, 960
Sau3AI GATC 5 cut(s) 283, 400, 406, 739, 928
Sau96I GGNCC 2 cut(s) 722, 917
SchI GAGTC 2 cut(s) 6, 435
ScrFI CCNGG 2 cut(s) 921, 922
SfcI CTRYAG 2 cut(s) 456, 762
SinI GGWCC 2 cut(s) 722, 917
SmaI CCCGGG 1 cut(s) 922
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
SpeI ACTAGT 1 cut(s) 808
Sse9I AATT 8 cut(s) 34, 68, 112, 196, 526, 561, 673, 947
SsiI CCGC 3 cut(s) 134, 249, 943
SspI AATATT 1 cut(s) 888
SspMI CTAG 2 cut(s) 404, 809
StyD4I CCNGG 2 cut(s) 919, 920
StyI CCWWGG 1 cut(s) 608
TaiI ACGT 2 cut(s) 666, 781
TaqI TCGA 2 cut(s) 64, 470
TaqII GACCGA 1 cut(s) 537
TasI AATT 8 cut(s) 34, 68, 112, 196, 526, 561, 673, 947
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 98, 744
Tru9I TTAA 2 cut(s) 98, 744
TscAI CASTG 5 cut(s) 325, 454, 546, 558, 880
TseFI GTSAC 3 cut(s) 314, 427, 549
TseI GCWGC 2 cut(s) 444, 959
Tsp45I GTSAC 3 cut(s) 314, 427, 549
TspDTI ATGAA 3 cut(s) 264, 615, 635
TspMI CCCGGG 1 cut(s) 920
TspRI CASTG 5 cut(s) 325, 454, 546, 558, 880
VpaK11BI GGWCC 2 cut(s) 722, 917
XapI RAATTY 1 cut(s) 526
XbaI TCTAGA 1 cut(s) 403
XceI RCATGY 1 cut(s) 437
XmaI CCCGGG 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 682
XmnI GAANNNNTTC 2 cut(s) 626, 663
XspI CTAG 2 cut(s) 404, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.