Rw5G039880

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003424
Physical Location & Seq
Reverse (-)
70427655 .. 70428398
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039880.1

Sequence Viewer

Length: 744 bp
ATGCCGGCCACCGCAGGAAGGGTTCGCATGCCCCCAAACAATCGGGTGCACAGTAGTGTTGCCCTTCAAACTCATGGTATATGGCAGAGTACAATTGGGTACGATCCCTATGCACCTCAGCCGAATTTGTCAAACTCAAAACCAGATGCTGAGAATGCATATGCTAGCTATCAAGGCCTTCTCCAACTCGCTCGTATAACAGGGCCGAATTCTGACGAGGTTCGTGGGGCGTGCAAGAGGTGTGGCCGGGTTGGGCACCTCACCTATCAATGTAGGAATTTTCTGAGTGTTAAGGACAAGGAGAAGGAGGACCCTGAAGCTATCCAGGCTGATGTTGCTTCTGAGTTGGGCAAGTTGAAGGGGAAGCTAGGTAAAGCGAAGGGAAAAGATGTTGTTAAGGCTGATAGTGAGGAGGAGGATGAAGACATTGAGAGTTCAGAATCGGACTATGATTCTGGTATGGAGAGGCTCATTGCTCAAAGATATGGGCAAAAGAGTTTTCGAAAGGAGAAGCTGAAAAAGAAGAACAAGGACTCGGATGTTGATGGTTCAGATACAGATTCTGGGGAGAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGAAGCAGAAAGAGGAAACATGATGATTCAGATGATTCTGAAAGGGATAGGAAGAAAAGAAGAAAGGAGAAACGGAGAAAGAGAGATGAGTCCTCGGATGAGGATGATAAACGACGTCGACGACATAGGAAGAGTAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

247

Amino Acids

28.27

Weight (kDa)

9.75

Isoelectric Point (pI)

67.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 74 - 93 1.3e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 718
AccB1I GGYRCC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 718
AciI CCGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 6, 244
AcsI RAATTY 3 cut(s) 124, 208, 277
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 715
AfaI GTAC 2 cut(s) 91, 101
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 68, 358
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 4 cut(s) 168, 320, 367, 514
AluI AGCT 4 cut(s) 168, 320, 367, 514
Alw21I GWGCWC 1 cut(s) 51
Alw44I GTGCAC 1 cut(s) 47
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 2 cut(s) 149, 563
AoxI GGCC 4 cut(s) 6, 175, 203, 244
ApaLI GTGCAC 1 cut(s) 47
ApoI RAATTY 3 cut(s) 124, 208, 277
AspS9I GGNCC 2 cut(s) 203, 310
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 502
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 2 cut(s) 51, 258
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 539
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 2 cut(s) 165, 368
Bme1390I CCNGG 2 cut(s) 248, 326
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 203, 310
BmiI GGNNCC 2 cut(s) 257, 312
BmrFI CCNGG 2 cut(s) 248, 326
BmsI GCATC 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 502
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 715
BsaJI CCNNGG 1 cut(s) 693
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 4
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 693
BseGI GGATG 4 cut(s) 424, 544, 703, 709
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 4 cut(s) 131, 141, 275, 333
BseRI GAGGAG 3 cut(s) 425, 428, 613
BseSI GKGCMC 2 cut(s) 51, 258
BshFI GGCC 4 cut(s) 8, 177, 205, 246
BshNI GGYRCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 5, 247
BslI CCNNNNNNNGG 1 cut(s) 18
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 4 cut(s) 8, 177, 205, 246
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 2 cut(s) 51, 258
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 12
BspANI GGCC 4 cut(s) 8, 177, 205, 246
BspCNI CTCAG 4 cut(s) 130, 142, 276, 334
BspLI GGNNCC 2 cut(s) 257, 312
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 693
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 715
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 3 cut(s) 572, 590, 725
BstACI GRCGYC 1 cut(s) 715
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 4 cut(s) 6, 29, 166, 232
BstDEI CTNAG 4 cut(s) 117, 150, 284, 342
BstF5I GGATG 4 cut(s) 424, 544, 703, 709
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 246, 324
BstSLI GKGCMC 2 cut(s) 51, 258
BstV2I GAAGAC 1 cut(s) 429
BsuRI GGCC 4 cut(s) 8, 177, 205, 246
BtsCI GGATG 4 cut(s) 424, 544, 703, 709
Cac8I GCNNGC 4 cut(s) 6, 29, 166, 232
CaiI CAGNNNCTG 2 cut(s) 149, 563
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 203, 310
Csp6I GTAC 2 cut(s) 90, 100
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 3 cut(s) 28, 74, 620
CviQI GTAC 2 cut(s) 90, 100
DdeI CTNAG 4 cut(s) 117, 150, 284, 342
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 6, 244
Eam1104I CTCTTC 3 cut(s) 572, 590, 725
EarI CTCTTC 3 cut(s) 572, 590, 725
Eco147I AGGCCT 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 3 cut(s) 31, 77, 623
FatI CATG 3 cut(s) 27, 73, 619
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 718
FokI GGATG 4 cut(s) 431, 551, 710, 716
FspBI CTAG 2 cut(s) 165, 368
HaeIII GGCC 4 cut(s) 8, 177, 205, 246
HapII CCGG 2 cut(s) 5, 247
Hin1I GRCGYC 1 cut(s) 715
Hin1II CATG 3 cut(s) 31, 77, 623
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HinfI GANTC 7 cut(s) 440, 452, 533, 560, 626, 635, 689
HpaII CCGG 2 cut(s) 5, 247
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 49, 719
Hpy8I GTNNAC 2 cut(s) 49, 719
Hpy99I CGWCG 3 cut(s) 717, 720, 723
HpyAV CCTTC 7 cut(s) 12, 74, 188, 298, 352, 373, 579
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 4 cut(s) 49, 113, 158, 234
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
HpyF3I CTNAG 4 cut(s) 117, 150, 284, 342
HpySE526I ACGT 1 cut(s) 715
Hsp92I GRCGYC 1 cut(s) 715
Hsp92II CATG 3 cut(s) 31, 77, 623
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 9 cut(s) 18, 156, 186, 260, 311, 327, 338, 441, 549
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 165, 368
MaeII ACGT 1 cut(s) 715
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 9 cut(s) 434, 535, 586, 589, 604, 607, 664, 672, 742
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 51, 258
MluCI AATT 4 cut(s) 93, 124, 208, 277
MlyI GAGTC 2 cut(s) 527, 698
MmeI TCCRAC 1 cut(s) 208
Mph1103I ATGCAT 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 2 cut(s) 291, 396
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 2 cut(s) 5, 247
MspR9I CCNGG 2 cut(s) 248, 326
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 160
NdeII GATC 1 cut(s) 103
NgoMIV GCCGGC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 3 cut(s) 31, 77, 623
NlaIV GGNNCC 2 cut(s) 257, 312
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 1 cut(s) 31
NspV TTCGAA 1 cut(s) 502
OliI CACNNNNGTG 1 cut(s) 54
PaeI GCATGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PctI GAATGC 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 5 cut(s) 440, 452, 560, 626, 635
PleI GAGTC 2 cut(s) 527, 697
PpsI GAGTC 2 cut(s) 527, 697
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 257, 312
PspPI GGNCC 2 cut(s) 203, 310
PspPPI RGGWCCY 1 cut(s) 310
PstNI CAGNNNCTG 2 cut(s) 149, 563
RsaI GTAC 2 cut(s) 91, 101
RsaNI GTAC 2 cut(s) 90, 100
RseI CAYNNNNRTG 1 cut(s) 54
SalI GTCGAC 1 cut(s) 717
SaqAI TTAA 2 cut(s) 291, 396
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 203, 310
SchI GAGTC 2 cut(s) 527, 698
ScrFI CCNGG 2 cut(s) 248, 326
SduI GDGCHC 2 cut(s) 51, 258
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 502
SgrDI CGTCGACG 1 cut(s) 717
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 54
SphI GCATGC 1 cut(s) 31
Sse9I AATT 4 cut(s) 93, 124, 208, 277
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 1 cut(s) 12
SspMI CTAG 2 cut(s) 165, 368
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 246, 324
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 718
TaqI TCGA 3 cut(s) 502, 590, 718
TasI AATT 4 cut(s) 93, 124, 208, 277
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 5 cut(s) 440, 452, 560, 626, 635
Tru1I TTAA 2 cut(s) 291, 396
Tru9I TTAA 2 cut(s) 291, 396
TspDTI ATGAA 1 cut(s) 435
TspGWI ACGGA 1 cut(s) 688
VneI GTGCAC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 3 cut(s) 124, 208, 277
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 718
XspI CTAG 2 cut(s) 165, 368
ZraI GACGTC 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.