RH5BG439400

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0003424
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG439400.1

Sequence Viewer

Length: 942 bp
ATGCCGGCCACCGCAGGAAGGGTTCGCATGCCCCCAAACAATCGGGTACACAGTAGTGTTGCCCTTCAAACTCATGGTATATGGCAGAGTACAATTGGGTACGATCCCTATGCACCTCAGCCGAATTTGTCAAACTCAAAACCAGATGCTGAGAATGCATATGCTAGCTATCAAGGCCTTCTCCAACTCGCTCGTATAACTGGGCCGAATTCTGACGAGGTTCGTGGGGCGTGCAAGAGGTGTGGCCGGGTTGGGCACCTCACCTATCAATGTAGGAATTTTCTGAGTGTTAAGGACAAGGAGAAGGAGGACCCTGAAGCTATCCAGGCTGATGTTGCTTCTGAGTTGGGCAAGTTGAAGGGGAAGCTGGGTAAAGCGAAGGGAAAAGATGTTGTTAAGGCTGATAGTGAGGAGGAGGATGAAGACATTGAGAGTTCAGATTCGGACTATGATTCTGATATGGAGAGGCTCATTACTCAAAGATATGGGCAAAAGAGTTTTCGAAAGGAGAAGCTGAAAAAGAAGAACAAGGACTCGGATGTTGATGGTTCAGATACAGATTCTGGGGAGAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGAAGCAGCAAGAGGAAACATGATGATTCGGATGACTCTGAAGAAGACAGGAAGAAAAGGAGAAAGGAGAAACGGAGAAAGAGGGATGAGTCTTCTGATGAGGATGGTAAACGACGTCGACGACATAGGAAGAGTAGGAAGGAGAAAAGGAGGAGGAGAAGTCATCGGTATTCCGATGATTCTGAGTCTGATGCATCTGAAGATAGACACCGCAGTCGGAGGAGCAGGAGGGCAGCAACACCATCTGATTCCGATTCAAGTGGCTCTGATGATGCGCAGGTAGGAAGGGGCAGGAGACAATCTGAGAAGAAGAGCAGGAAACACCATCGTGATGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

313

Amino Acids

36.02

Weight (kDa)

9.79

Isoelectric Point (pI)

83.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 74 - 93 1.8e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 813
AatII GACGTC 1 cut(s) 718
Acc16I TGCGCA 1 cut(s) 876
Acc36I ACCTGC 1 cut(s) 868
AccB1I GGYRCC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 718
AciI CCGC 2 cut(s) 12, 811
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 6, 244
AcsI RAATTY 3 cut(s) 124, 208, 277
AcuI CTGAAG 3 cut(s) 336, 660, 819
AcyI GRCGYC 1 cut(s) 715
AfaI GTAC 3 cut(s) 48, 91, 101
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 3 cut(s) 68, 358, 858
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 2 cut(s) 54, 927
AluBI AGCT 4 cut(s) 168, 320, 367, 514
AluI AGCT 4 cut(s) 168, 320, 367, 514
Alw26I GTCTC 1 cut(s) 889
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 2 cut(s) 149, 563
AoxI GGCC 4 cut(s) 6, 175, 203, 244
ApeKI GCWGC 2 cut(s) 606, 833
ApoI RAATTY 3 cut(s) 124, 208, 277
AspLEI GCGC 1 cut(s) 877
AspS9I GGNCC 2 cut(s) 203, 310
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 502
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 3 cut(s) 429, 651, 684
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 618, 845
BccI CCATC 4 cut(s) 539, 698, 850, 933
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 889
BfaI CTAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 868
BisI GCNGC 2 cut(s) 607, 834
BlsI GCNGC 2 cut(s) 608, 835
Bme1390I CCNGG 2 cut(s) 248, 326
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 203, 310
BmiI GGNNCC 2 cut(s) 257, 312
BmrFI CCNGG 2 cut(s) 248, 326
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 4 cut(s) 136, 781, 803, 862
BmtI GCTAGC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 3 cut(s) 429, 651, 684
Bpu10I CCTNAGC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 502
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 715
BsaXI ACNNNNNCTCC 2 cut(s) 745, 775
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 326
BseGI GGATG 5 cut(s) 424, 544, 637, 691, 709
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 6 cut(s) 131, 141, 275, 333, 774, 894
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 6 cut(s) 425, 428, 613, 766, 769, 835
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 2 cut(s) 618, 845
BseYI CCCAGC 1 cut(s) 367
BshFI GGCC 4 cut(s) 8, 177, 205, 246
BshNI GGYRCC 1 cut(s) 255
BsiSI CCGG 2 cut(s) 5, 247
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 889
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 4 cut(s) 8, 177, 205, 246
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 12, 811
BspANI GGCC 4 cut(s) 8, 177, 205, 246
BspCNI CTCAG 6 cut(s) 130, 142, 276, 334, 775, 895
BspLI GGNNCC 2 cut(s) 257, 312
BspMI ACCTGC 1 cut(s) 868
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 98
BspQI GCTCTTC 1 cut(s) 905
BspT104I TTCGAA 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 715
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 4 cut(s) 572, 590, 725, 905
BstACI GRCGYC 1 cut(s) 715
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 4 cut(s) 6, 29, 166, 232
BstDEI CTNAG 6 cut(s) 117, 150, 284, 342, 783, 903
BstF5I GGATG 5 cut(s) 424, 544, 637, 691, 709
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 246, 324
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 618, 845
BstV2I GAAGAC 3 cut(s) 429, 651, 684
BsuRI GGCC 4 cut(s) 8, 177, 205, 246
BtsCI GGATG 5 cut(s) 424, 544, 637, 691, 709
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 4 cut(s) 6, 29, 166, 232
CaiI CAGNNNCTG 2 cut(s) 149, 563
CfoI GCGC 1 cut(s) 877
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 203, 310
Csp6I GTAC 3 cut(s) 47, 90, 100
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 3 cut(s) 28, 74, 620
CviQI GTAC 3 cut(s) 47, 90, 100
DdeI CTNAG 6 cut(s) 117, 150, 284, 342, 783, 903
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 813
DseDI GACNNNNNNGTC 1 cut(s) 813
EaeI YGGCCR 2 cut(s) 6, 244
Eam1104I CTCTTC 4 cut(s) 572, 590, 725, 905
EarI CTCTTC 4 cut(s) 572, 590, 725, 905
Eco147I AGGCCT 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 3 cut(s) 336, 660, 819
EcoO109I RGGNCCY 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 324
EcoT22I ATGCAT 2 cut(s) 160, 796
FaeI CATG 3 cut(s) 31, 77, 623
FatI CATG 3 cut(s) 27, 73, 619
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 718
Fnu4HI GCNGC 2 cut(s) 607, 834
FokI GGATG 5 cut(s) 431, 551, 644, 698, 716
Fsp4HI GCNGC 2 cut(s) 607, 834
FspBI CTAG 1 cut(s) 165
FspI TGCGCA 1 cut(s) 876
GlaI GCGC 1 cut(s) 876
GluI GCNGC 2 cut(s) 607, 834
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 4 cut(s) 8, 177, 205, 246
HapII CCGG 2 cut(s) 5, 247
HhaI GCGC 1 cut(s) 877
Hin1I GRCGYC 1 cut(s) 715
Hin1II CATG 3 cut(s) 31, 77, 623
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HpaII CCGG 2 cut(s) 5, 247
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 49, 710, 719
Hpy188III TCNNGA 1 cut(s) 929
Hpy8I GTNNAC 3 cut(s) 49, 710, 719
Hpy99I CGWCG 3 cut(s) 717, 720, 723
HpyAV CCTTC 9 cut(s) 12, 74, 188, 298, 352, 373, 579, 733, 879
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 4 cut(s) 113, 158, 234, 794
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
HpyF3I CTNAG 6 cut(s) 117, 150, 284, 342, 783, 903
HpySE526I ACGT 1 cut(s) 715
Hsp92I GRCGYC 1 cut(s) 715
Hsp92II CATG 3 cut(s) 31, 77, 623
HspAI GCGC 1 cut(s) 875
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 905
LmnI GCTCC 1 cut(s) 822
Lsp1109I GCAGC 2 cut(s) 618, 845
LweI GCATC 4 cut(s) 136, 781, 803, 862
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 715
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 4 cut(s) 93, 124, 208, 277
MlyI GAGTC 4 cut(s) 527, 629, 698, 794
MmeI TCCRAC 2 cut(s) 208, 797
Mph1103I ATGCAT 2 cut(s) 160, 796
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 2 cut(s) 291, 396
MslI CAYNNNNRTG 3 cut(s) 54, 927, 930
MspI CCGG 2 cut(s) 5, 247
MspR9I CCNGG 2 cut(s) 248, 326
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 160
NdeII GATC 1 cut(s) 103
NgoMIV GCCGGC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 3 cut(s) 31, 77, 623
NlaIV GGNNCC 2 cut(s) 257, 312
NsbI TGCGCA 1 cut(s) 876
NsiI ATGCAT 2 cut(s) 160, 796
NspI RCATGY 1 cut(s) 31
NspV TTCGAA 1 cut(s) 502
OliI CACNNNNGTG 2 cut(s) 54, 927
PaeI GCATGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 905
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PctI GAATGC 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 7 cut(s) 440, 452, 560, 626, 779, 848, 854
PkrI GCNGC 2 cut(s) 608, 835
PleI GAGTC 4 cut(s) 527, 629, 697, 793
PpsI GAGTC 4 cut(s) 527, 629, 697, 793
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 257, 312
PspPI GGNCC 2 cut(s) 203, 310
PspPPI RGGWCCY 1 cut(s) 310
PstNI CAGNNNCTG 2 cut(s) 149, 563
RsaI GTAC 3 cut(s) 48, 91, 101
RsaNI GTAC 3 cut(s) 47, 90, 100
RseI CAYNNNNRTG 3 cut(s) 54, 927, 930
SalI GTCGAC 1 cut(s) 717
SapI GCTCTTC 1 cut(s) 905
SaqAI TTAA 2 cut(s) 291, 396
SatI GCNGC 2 cut(s) 607, 834
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 203, 310
SchI GAGTC 4 cut(s) 527, 629, 698, 794
ScrFI CCNGG 2 cut(s) 248, 326
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 4 cut(s) 136, 781, 803, 862
SfuI TTCGAA 1 cut(s) 502
SgrDI CGTCGACG 1 cut(s) 717
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 3 cut(s) 54, 927, 930
SphI GCATGC 1 cut(s) 31
Sse9I AATT 4 cut(s) 93, 124, 208, 277
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 2 cut(s) 12, 811
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 246, 324
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 718
TaqI TCGA 3 cut(s) 502, 590, 718
TasI AATT 4 cut(s) 93, 124, 208, 277
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 7 cut(s) 440, 452, 560, 626, 779, 848, 854
Tru1I TTAA 2 cut(s) 291, 396
Tru9I TTAA 2 cut(s) 291, 396
TseI GCWGC 2 cut(s) 606, 833
TspDTI ATGAA 1 cut(s) 435
TspGWI ACGGA 1 cut(s) 688
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 3 cut(s) 124, 208, 277
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 718
XspI CTAG 1 cut(s) 165
ZraI GACGTC 1 cut(s) 716
Zsp2I ATGCAT 2 cut(s) 160, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.