RchiOBHm_Chr5g0064841

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003424
Physical Location & Seq
Reverse (-)
70775708 .. 70776224
517 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34077

Sequence Viewer

Length: 468 bp
ATGCTGGCCACCGCAGGAAGGGTTCGCATGCCGCCAAACAATCGGGTACACAGTAGTGTTGCCCTTCAAACTCATGGTATATGGCAGAGTACAATTGGGTACGATCCCTATGCACCTCAGCCGAATTTGTCAAACTCAAAACCAGATGCTGAGAATGCATATGCTAGCTATCAAGGCCTTCTCCAACTCGCTCGTATAACTAGGCCGAATTCTGACGAGGTTCGTGGGGCGTGCAAGAGGTGTGGCCGGGTTGGGCACCTCACCTATCAATGTAGGAATTTTCTGAGTGTTAAGGACAAGGAGAAGGAGGACCCTGAAGCTATCCAGGCTGATGTTGCTTCTGAGTTGGGCAAGTTGAAGGGGAAGCTGGGTAAAGCGAAGGGAAAAGATGTTGTTAAGGCTGATAGTGAGGAGGAGGATGAAGACATTGAGAATATGGGCAAAAGAGTTTTCGAAAGCAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

155

Amino Acids

17.13

Weight (kDa)

8.4

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 74 - 93 6.6e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AciI CCGC 2 cut(s) 12, 32
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 6, 244
AcsI RAATTY 3 cut(s) 124, 208, 277
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 3 cut(s) 48, 91, 101
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 68, 358
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 4 cut(s) 168, 320, 367, 465
AluI AGCT 4 cut(s) 168, 320, 367, 465
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 2 cut(s) 149, 465
AoxI GGCC 4 cut(s) 6, 175, 203, 244
ApoI RAATTY 3 cut(s) 124, 208, 277
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 453
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 258
BalI TGGCCA 1 cut(s) 8
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 429
BbvCI CCTCAGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 2 cut(s) 165, 201
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 248, 326
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 257, 312
BmrFI CCNGG 2 cut(s) 248, 326
BmsI GCATC 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 4 cut(s) 131, 141, 275, 333
BseRI GAGGAG 2 cut(s) 425, 428
BseSI GKGCMC 1 cut(s) 258
BseYI CCCAGC 1 cut(s) 367
BshFI GGCC 4 cut(s) 8, 177, 205, 246
BshNI GGYRCC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 18
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 4 cut(s) 8, 177, 205, 246
Bsp119I TTCGAA 1 cut(s) 453
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 12, 32
BspANI GGCC 4 cut(s) 8, 177, 205, 246
BspCNI CTCAG 4 cut(s) 130, 142, 276, 334
BspLI GGNNCC 2 cut(s) 257, 312
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 255
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 4 cut(s) 6, 29, 166, 232
BstDEI CTNAG 4 cut(s) 117, 150, 284, 342
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 246, 324
BstSLI GKGCMC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 429
BsuRI GGCC 4 cut(s) 8, 177, 205, 246
BtsCI GGATG 1 cut(s) 424
Cac8I GCNNGC 4 cut(s) 6, 29, 166, 232
CaiI CAGNNNCTG 2 cut(s) 149, 465
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 3 cut(s) 47, 90, 100
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 2 cut(s) 28, 74
CviQI GTAC 3 cut(s) 47, 90, 100
DdeI CTNAG 4 cut(s) 117, 150, 284, 342
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 6, 244
Eco147I AGGCCT 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 2 cut(s) 31, 77
FaiI YATR 9 cut(s) 29, 75, 80, 82, 111, 160, 162, 197, 437
FatI CATG 2 cut(s) 27, 73
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 2 cut(s) 165, 201
GluI GCNGC 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 4 cut(s) 8, 177, 205, 246
HapII CCGG 1 cut(s) 247
Hin1II CATG 2 cut(s) 31, 77
HpaII CCGG 1 cut(s) 247
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 214, 285, 343
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 6 cut(s) 12, 74, 188, 298, 352, 373
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 113, 158, 234
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
HpyF3I CTNAG 4 cut(s) 117, 150, 284, 342
Hsp92II CATG 2 cut(s) 31, 77
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 156, 260, 311, 327, 338, 353
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 165, 201
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 434
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 4 cut(s) 93, 124, 208, 277
MluNI TGGCCA 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 8 cut(s) 126, 211, 231, 269, 301, 403, 406, 409
Mox20I TGGCCA 1 cut(s) 8
Mph1103I ATGCAT 1 cut(s) 160
MscI TGGCCA 1 cut(s) 8
MseI TTAA 2 cut(s) 291, 396
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 8
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 2 cut(s) 248, 326
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 4 cut(s) 155, 174, 326, 335
NciI CCSGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 160
NdeII GATC 1 cut(s) 103
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 2 cut(s) 31, 77
NlaIV GGNNCC 2 cut(s) 257, 312
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 1 cut(s) 31
NspV TTCGAA 1 cut(s) 453
OliI CACNNNNGTG 1 cut(s) 54
PaeI GCATGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 177
PctI GAATGC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 257, 312
PspPI GGNCC 1 cut(s) 310
PspPPI RGGWCCY 1 cut(s) 310
PstNI CAGNNNCTG 2 cut(s) 149, 465
RsaI GTAC 3 cut(s) 48, 91, 101
RsaNI GTAC 3 cut(s) 47, 90, 100
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 291, 396
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 248, 326
SduI GDGCHC 1 cut(s) 258
SetI ASST 9 cut(s) 118, 170, 222, 242, 261, 266, 322, 369, 467
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 453
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 54
SphI GCATGC 1 cut(s) 31
Sse9I AATT 4 cut(s) 93, 124, 208, 277
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 2 cut(s) 12, 32
SspMI CTAG 2 cut(s) 165, 201
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 246, 324
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 453
TasI AATT 4 cut(s) 93, 124, 208, 277
TatI WGTACW 1 cut(s) 89
TauI GCSGC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 291, 396
Tru9I TTAA 2 cut(s) 291, 396
TspDTI ATGAA 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 3 cut(s) 124, 208, 277
XceI RCATGY 1 cut(s) 31
XspI CTAG 2 cut(s) 165, 201
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.