pycom03g07480

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0003424
Physical Location & Seq
Forward (+)
5964379 .. 5964912
534 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07480.1

Sequence Viewer

Length: 534 bp
ATGCCTGCCACAGCGGGAAGGGTTCGCATGCCCGCGAACAATCGGGTACACAGTAGTGCCGCCCTTCAGACCCACGGTATATGGCAGAGTGCAATTGGGTATGACCCCTATGCACCCAACAAAGATGACACCAAGAGCACTGCACAACCCAATGTGTCAAACGATGAACCGGATGGTGAGAATGCATATGCTAGCTTCCAGGGCCTCCTTGCGCTTGCCCGTATAACTGGGTCCAGCGCTGACGAGACTCGTGGGTCTTGCAGCAGGTGCGGCCGTGTTGGGCACCTCAAGTTTCAGTGCAGGAACTTTCTGAGTGTTAAGGAAGATAAAGAGAGAGAGCCTGAAGTGATTCAGGGTGATGTTGCATCAGAATTGGCTAGGTTGAAGAGGAAGATTGGTAGGACCAGTGGTAAAAATGTCGAAGAGAGTGAGGAGAGTGAGGATGAGGATGAAGACAGTGAGAGCGAGGATTCGGATTATGATTCAGAGATCGAGAACGATCATTGCTCAAAAAAATGGGTTAAAGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

178

Amino Acids

19.57

Weight (kDa)

4.87

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
AasI GACNNNNNNGTC 1 cut(s) 253
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 282
AccII CGCG 1 cut(s) 35
AciI CCGC 4 cut(s) 14, 33, 60, 270
AcoI YGGCCR 1 cut(s) 271
AcuI CTGAAG 2 cut(s) 50, 363
AfaI GTAC 1 cut(s) 48
AfeI AGCGCT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 1 cut(s) 198
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 239
Aor51HI AGCGCT 1 cut(s) 238
AoxI GGCC 2 cut(s) 202, 271
ApeKI GCWGC 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 2 cut(s) 214, 239
AspS9I GGNCC 3 cut(s) 202, 231, 402
AsuHPI GGTGA 2 cut(s) 188, 368
AsuNHI GCTAGC 1 cut(s) 191
AvaII GGWCC 2 cut(s) 231, 402
BaeGI GKGCMC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 282
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 2 cut(s) 192, 378
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 3 cut(s) 60, 262, 271
BlsI GCNGC 3 cut(s) 61, 263, 272
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 2 cut(s) 231, 402
BmgT120I GGNCC 3 cut(s) 202, 231, 402
BmiI GGNNCC 2 cut(s) 232, 284
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 374
BmtI GCTAGC 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 73, 199
BsaWI WCCGGW 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 232, 405
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 73, 199
BseGI GGATG 3 cut(s) 178, 448, 454
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 232, 405
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 285
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 273
BsgI GTGCAG 2 cut(s) 126, 319
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 204, 273
BshNI GGYRCC 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 2 cut(s) 204, 273
Bsp1286I GDGCHC 2 cut(s) 140, 285
Bsp143I GATC 2 cut(s) 489, 499
BspACI CCGC 4 cut(s) 14, 33, 60, 270
BspANI GGCC 2 cut(s) 204, 273
BspCNI CTCAG 1 cut(s) 303
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 232, 284
BspMI ACCTGC 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 2 cut(s) 232, 405
BssECI CCNNGG 2 cut(s) 73, 199
BssMI GATC 2 cut(s) 489, 499
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 3 cut(s) 53, 77, 458
Bst6I CTCTTC 2 cut(s) 380, 417
BstAPI GCANNNNNTGC 1 cut(s) 267
BstC8I GCNNGC 5 cut(s) 6, 29, 33, 193, 216
BstDEI CTNAG 1 cut(s) 311
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 3 cut(s) 178, 448, 454
BstFNI CGCG 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 2 cut(s) 214, 239
BstKTI GATC 2 cut(s) 492, 502
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 2 cut(s) 489, 499
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 3 cut(s) 201, 267, 270
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 459
BstZI CGGCCG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 204, 273
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 3 cut(s) 178, 448, 454
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 4 cut(s) 138, 302, 412, 463
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 5 cut(s) 6, 29, 33, 193, 216
CfoI GCGC 2 cut(s) 214, 239
Cfr13I GGNCC 3 cut(s) 202, 231, 402
Csp6I GTAC 1 cut(s) 47
CviAII CATG 1 cut(s) 28
CviJI RGCY 5 cut(s) 195, 204, 273, 340, 377
CviKI_1 RGCY 5 cut(s) 195, 204, 273, 340, 377
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 1 cut(s) 311
DpnI GATC 2 cut(s) 491, 501
DpnII GATC 2 cut(s) 489, 499
DrdI GACNNNNNNGTC 1 cut(s) 253
DseDI GACNNNNNNGTC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 271
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 380, 417
EarI CTCTTC 2 cut(s) 380, 417
EclXI CGGCCG 1 cut(s) 271
Eco47I GGWCC 2 cut(s) 231, 402
Eco47III AGCGCT 1 cut(s) 238
Eco52I CGGCCG 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 50, 363
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 187
FaeI CATG 1 cut(s) 31
FaiI YATR 9 cut(s) 29, 80, 82, 102, 111, 187, 189, 224, 480
FatI CATG 1 cut(s) 27
FauI CCCGC 2 cut(s) 7, 40
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 60, 262, 271
FokI GGATG 3 cut(s) 185, 455, 461
Fsp4HI GCNGC 3 cut(s) 60, 262, 271
FspBI CTAG 2 cut(s) 192, 378
GlaI GCGC 2 cut(s) 213, 238
GluI GCNGC 3 cut(s) 60, 262, 271
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 204, 273
HapII CCGG 1 cut(s) 170
HhaI GCGC 2 cut(s) 214, 239
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 2 cut(s) 212, 237
HinP1I GCGC 2 cut(s) 212, 237
HinfI GANTC 4 cut(s) 247, 349, 470, 482
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 188, 368
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 5 cut(s) 69, 312, 370, 475, 487
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 12, 74
HpyCH4III ACNGT 3 cut(s) 53, 77, 458
HpyCH4V TGCA 7 cut(s) 92, 113, 143, 185, 261, 300, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 267, 270
HpyF3I CTNAG 1 cut(s) 311
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 2 cut(s) 212, 237
Kzo9I GATC 2 cut(s) 489, 499
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 374
MaeI CTAG 2 cut(s) 192, 378
MalI GATC 2 cut(s) 491, 501
MboI GATC 2 cut(s) 489, 499
MboII GAAGA 5 cut(s) 335, 397, 403, 434, 464
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 140, 285
MluCI AATT 2 cut(s) 93, 371
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 7 cut(s) 215, 296, 381, 424, 433, 439, 460
Mph1103I ATGCAT 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 2 cut(s) 318, 522
MslI CAYNNNNRTG 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 201, 267, 270
NdeI CATATG 1 cut(s) 187
NdeII GATC 2 cut(s) 489, 499
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 2 cut(s) 232, 284
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 54
PaeI GCATGC 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 255
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 3 cut(s) 349, 470, 482
PkrI GCNGC 3 cut(s) 61, 263, 272
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 232, 284
PspPI GGNCC 3 cut(s) 202, 231, 402
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 318, 522
SatI GCNGC 3 cut(s) 60, 262, 271
Sau3AI GATC 2 cut(s) 489, 499
Sau96I GGNCC 3 cut(s) 202, 231, 402
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 140, 285
SetI ASST 5 cut(s) 197, 269, 288, 383, 529
SfaNI GCATC 1 cut(s) 374
SinI GGWCC 2 cut(s) 231, 402
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SphI GCATGC 1 cut(s) 31
Sse9I AATT 2 cut(s) 93, 371
SsiI CCGC 4 cut(s) 14, 33, 60, 270
SspMI CTAG 2 cut(s) 192, 378
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 3 cut(s) 53, 77, 458
TaqI TCGA 2 cut(s) 420, 492
TasI AATT 2 cut(s) 93, 371
TauI GCSGC 2 cut(s) 62, 273
TfiI GAWTC 3 cut(s) 349, 470, 482
Tru1I TTAA 2 cut(s) 318, 522
Tru9I TTAA 2 cut(s) 318, 522
TscAI CASTG 4 cut(s) 145, 302, 412, 463
TseI GCWGC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 180, 465
TspRI CASTG 4 cut(s) 145, 302, 412, 463
VpaK11BI GGWCC 2 cut(s) 231, 402
XceI RCATGY 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 192, 378
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.