Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003424

Physical Location & Seq

Genomic Coordinates Forward (+)

9527449 .. 9528978

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1108100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCCTGCCACAGCGGGAAGGGTTCGCATGCCCGCGAACAATCGGGTACACAGTAGTGCCGCCCTTCAAACCCACGGTATATGGCAGAGTGCAATTGGGTATGACCCCTATGCACCCAACAAAGATGACACCAAGAGCTCTGCGCAACCCGATGTGTCAAACGCTGAACCGGATGGTGAGAATGCATATGCGAGCTTCCAGGGCCTCCTTGCACTTGCCCGTATAACTGGGTCCAGCGCTGATGAGACTCGTGGGTCATGCAGCAGGTGCGGCCGTGTTGGACACCTCAAGTTTCAGTGCAGGAACTTTCTGAGTGTTAAGGAAGATAAAGAGAGAGAGCCGGAAGGGATTCAGGGTGATGTTGCCTCAGAGTTGGCTAGGTTGAAGAGGAAGATCGGTAGGAGCAGTGGGAAAAATGTGGATGAGAGTGAGGAGAGTGAGGATGAGGATGAAGACAGTGAGAGCGAGGATTCGGATTATGATTCAGAAATTGAGAAGATCATTGCTCAAAAAAATGGGATAAAGAGAAAAAGGAAGGAGAAGCGGAGGAAGAGGGATGAGTCCTCAGATGAGGATGGCGAGCGTCGGCGGCGGCATAGGAAAAGTAGGAAGGAGAAGAGGAGGAGGAGAAGTCATCGGCATTCAGATGATTCTGAATCTGATTCGTCTGATGATTCTCGTAGACACCGTCGGAGGAGCAGGAAGGCAGCAACACCATCTGATTCGGATGATGATTCACGGGTAGGTAGGGGCAGGAAGCGATCTGAGAAGAAGAGCTTGAAACGCCATCACAAGGATGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

269

Amino Acids

30.53

Weight (kDa)

9.33

Isoelectric Point (pI)

90.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28910 AT2G28910 AT2G28910
fragaria_vesca	FvH4_3g36111 FvH4_3g36111
malus_domestica	MD03G1093300.v1.1 MD11G1107700.v1.1 MD11G1108100.v1.1
prunus_persica	Prupe.6G077300_v2.0.a1
pyrus_communis	pycom03g07480 pycom11g08930
rosa_chinensis	RchiOBHm_Chr5g0064541 RchiOBHm_Chr5g0064551 RchiOBHm_Chr5g0064811 RchiOBHm_Chr5g0064841
rosa_laevigata	RLG00000001342 RLG00000035732 RLG00000035734 RLG00000035736
rosa_roxburghii	Rroxscaffold_1G00016450 Rroxscaffold_1G00016480 Rroxscaffold_6G00399790 Rroxscaffold_6G00400120
rosa_rugosa	Rorug05G0366000 Rorug05G0366100 Rorug05G0366500
rosa_samantha	Rh3CG275300 Rh3DG272600 Rh5AG424000 Rh5BG439400 Rh5CG462000 Rh5CG462100 Rh5DG452700 Rh5DG452900
rosa_wichuraiana	Rw5G039860 Rw5G039880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
AasI	GACNNNNNNGTC	1 cut(s)	253
Acc16I	TGCGCA	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	682
AccII	CGCG	1 cut(s)	35
AciI	CCGC	7 cut(s)	14, 33, 60, 270, 544, 589, 592
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	1 cut(s)	48
AfeI	AGCGCT	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	793
AgsI	TTSAA	3 cut(s)	68, 385, 781
AjnI	CCWGG	1 cut(s)	198
AleI	CACNNNNGTG	1 cut(s)	54
AluBI	AGCT	3 cut(s)	138, 195, 777
AluI	AGCT	3 cut(s)	138, 195, 777
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	238
AoxI	GGCC	2 cut(s)	202, 271
ApeKI	GCWGC	2 cut(s)	261, 707
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	2 cut(s)	145, 239
AspS9I	GGNCC	2 cut(s)	202, 231
AsuHPI	GGTGA	2 cut(s)	188, 368
AvaII	GGWCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	273, 719
BccI	CCATC	4 cut(s)	167, 569, 724, 795
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	6 cut(s)	60, 262, 271, 590, 593, 708
BlsI	GCNGC	6 cut(s)	61, 263, 272, 591, 594, 709
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	202, 231
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	73, 199
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	1 cut(s)	793
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	73, 199
BseGI	GGATG	8 cut(s)	178, 427, 448, 454, 562, 580, 733, 802
BseLI	CCNNNNNNNGG	1 cut(s)	793
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	4 cut(s)	302, 381, 579, 756
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	5 cut(s)	446, 634, 637, 640, 709
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	273, 719
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	204, 273
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	170, 341
BslI	CCNNNNNNNGG	1 cut(s)	793
BsmAI	GTCTC	1 cut(s)	239
BsmI	GAATGC	2 cut(s)	187, 640
BsnI	GGCC	2 cut(s)	204, 273
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	393, 498, 761
BspACI	CCGC	7 cut(s)	14, 33, 60, 270, 544, 589, 592
BspANI	GGCC	2 cut(s)	204, 273
BspCNI	CTCAG	4 cut(s)	303, 380, 578, 757
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	73, 199
BssMI	GATC	3 cut(s)	393, 498, 761
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	4 cut(s)	53, 77, 458, 689
Bst6I	CTCTTC	4 cut(s)	380, 545, 611, 767
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	5 cut(s)	6, 29, 33, 193, 581
BstDEI	CTNAG	4 cut(s)	311, 367, 565, 765
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	8 cut(s)	178, 427, 448, 454, 562, 580, 733, 802
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	145, 239
BstKTI	GATC	3 cut(s)	396, 501, 764
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	3 cut(s)	393, 498, 761
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	5 cut(s)	201, 267, 270, 589, 783
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	273, 719
BstV2I	GAAGAC	1 cut(s)	459
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	204, 273
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	8 cut(s)	178, 427, 448, 454, 562, 580, 733, 802
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	3 cut(s)	302, 412, 463
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	5 cut(s)	6, 29, 33, 193, 581
CfoI	GCGC	2 cut(s)	145, 239
Cfr13I	GGNCC	2 cut(s)	202, 231
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	28, 258
CviJI	RGCY	7 cut(s)	138, 195, 204, 273, 340, 377, 777
CviKI_1	RGCY	7 cut(s)	138, 195, 204, 273, 340, 377, 777
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	4 cut(s)	311, 367, 565, 765
DpnI	GATC	3 cut(s)	395, 500, 763
DpnII	GATC	3 cut(s)	393, 498, 761
DrdI	GACNNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	4 cut(s)	380, 545, 611, 767
EarI	CTCTTC	4 cut(s)	380, 545, 611, 767
Ecl136II	GAGCTC	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	238
Eco52I	CGGCCG	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	2 cut(s)	31, 261
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FatI	CATG	2 cut(s)	27, 257
FauI	CCCGC	2 cut(s)	7, 40
FauNDI	CATATG	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	682
Fnu4HI	GCNGC	6 cut(s)	60, 262, 271, 590, 593, 708
FokI	GGATG	7 cut(s)	185, 434, 455, 461, 569, 587, 740
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	6 cut(s)	60, 262, 271, 590, 593, 708
FspBI	CTAG	1 cut(s)	378
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	2 cut(s)	144, 238
GluI	GCNGC	6 cut(s)	60, 262, 271, 590, 593, 708
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	204, 273
HapII	CCGG	2 cut(s)	170, 341
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	2 cut(s)	145, 239
Hin1II	CATG	2 cut(s)	31, 261
Hin6I	GCGC	2 cut(s)	143, 237
HinP1I	GCGC	2 cut(s)	143, 237
HpaII	CCGG	2 cut(s)	170, 341
HphI	GGTGA	2 cut(s)	188, 368
Hpy166II	GTNNAC	2 cut(s)	49, 683
Hpy8I	GTNNAC	2 cut(s)	49, 683
Hpy99I	CGWCG	2 cut(s)	588, 693
HpyAV	CCTTC	6 cut(s)	12, 74, 338, 529, 604, 697
HpyCH4III	ACNGT	4 cut(s)	53, 77, 458, 689
HpyCH4V	TGCA	6 cut(s)	92, 113, 185, 212, 261, 300
HpyF10VI	GCNNNNNNNGC	5 cut(s)	201, 267, 270, 589, 783
HpyF3I	CTNAG	4 cut(s)	311, 367, 565, 765
Hsp92II	CATG	2 cut(s)	31, 261
HspAI	GCGC	2 cut(s)	143, 237
Kzo9I	GATC	3 cut(s)	393, 498, 761
LguI	GCTCTTC	1 cut(s)	767
LmnI	GCTCC	2 cut(s)	402, 696
Lsp1109I	GCAGC	2 cut(s)	273, 719
MaeI	CTAG	1 cut(s)	378
MalI	GATC	3 cut(s)	395, 500, 763
MboI	GATC	3 cut(s)	393, 498, 761
MboII	GAAGA	9 cut(s)	335, 397, 403, 464, 508, 562, 628, 781, 784
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	2 cut(s)	93, 489
MlyI	GAGTC	2 cut(s)	241, 569
MmeI	TCCRAC	2 cut(s)	259, 671
Mph1103I	ATGCAT	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	3 cut(s)	54, 645, 795
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	2 cut(s)	170, 341
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	2 cut(s)	187, 640
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	5 cut(s)	201, 267, 270, 589, 783
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	3 cut(s)	393, 498, 761
NlaIII	CATG	2 cut(s)	31, 261
NlaIV	GGNNCC	1 cut(s)	232
NsbI	TGCGCA	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	767
PcsI	WCGNNNNNNNCGW	1 cut(s)	685
PctI	GAATGC	2 cut(s)	187, 640
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	9 cut(s)	349, 470, 482, 650, 656, 662, 674, 722, 734
PflFI	GACNNNGTC	1 cut(s)	687
PkrI	GCNGC	6 cut(s)	61, 263, 272, 591, 594, 709
PleI	GAGTC	2 cut(s)	241, 568
PpsI	GAGTC	2 cut(s)	241, 568
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	202, 231
PsyI	GACNNNGTC	1 cut(s)	687
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	3 cut(s)	54, 645, 795
SacI	GAGCTC	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	767
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	6 cut(s)	60, 262, 271, 590, 593, 708
Sau3AI	GATC	3 cut(s)	393, 498, 761
Sau96I	GGNCC	2 cut(s)	202, 231
SchI	GAGTC	2 cut(s)	241, 569
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	7 cut(s)	140, 197, 269, 288, 383, 748, 779
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	3 cut(s)	54, 645, 795
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	2 cut(s)	93, 489
SsiI	CCGC	7 cut(s)	14, 33, 60, 270, 544, 589, 592
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	4 cut(s)	53, 77, 458, 689
TasI	AATT	2 cut(s)	93, 489
TauI	GCSGC	4 cut(s)	62, 273, 592, 595
TfiI	GAWTC	9 cut(s)	349, 470, 482, 650, 656, 662, 674, 722, 734
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	302, 412, 463
TseI	GCWGC	2 cut(s)	261, 707
TspDTI	ATGAA	1 cut(s)	465
TspRI	CASTG	3 cut(s)	302, 412, 463
Tth111I	GACNNNGTC	1 cut(s)	687
VpaK11BI	GGWCC	1 cut(s)	231
XceI	RCATGY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	682
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.