RLG00000035734

CAX-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003424
Physical Location & Seq
Reverse (-)
70988030 .. 70988709
680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035734

Sequence Viewer

Length: 585 bp
ATGCCGGCCACCGCAGGAAGGGTTCGCATGGCCCCAAACAATCGGAGTACAATTGGGTACGATCCCTATGCACCTGAGCTGATTTTGTCAAACTCAAAACCAGATGCTGAGAATGCATATGCTAGCTACCAAGGCCTTCTCCAACTCGCTCGTATAACTAGGCCGAATTCTGACGAGGTTCGTGGGGCTTGCAATAGGTGCGGCCGGGTTGGGCACCTCACCTATCAATGTAGGAACTTTCTGAGTGTTAACGACAAGGAGAAGGAGGACCTTGAAGATATCCAGGCTGATGTTGCTTCTGAGTTGGGCAAGTTGAAGGGGAAGCTGGGTAAGGCGAAGGGAAAAGATGTTGTTAAGACTGATAGTGAGGAGGAGGATGAAGACAGTGAGAGTTTAGATTCGGACTATGATTCTGATATGGAGACGCTCATTACTCAAAGATATGGGAAAAAGAGTTTTCGAAAGGAGAAGCTGAAAAAGAAGAACAAGGACTCGGATGTTGATGGTTCAGATACAGATTATAGGGAGAGGAAGAAGAGAGGAAGGTCAAAGAAGAGGAGAAGCAGAAAGAGGAAACCGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

195

Amino Acids

22.02

Weight (kDa)

9.27

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 60 - 79 4.3e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AciI CCGC 2 cut(s) 12, 201
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 2 cut(s) 6, 202
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 2 cut(s) 49, 59
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 275, 316
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 4 cut(s) 79, 126, 325, 472
AluI AGCT 4 cut(s) 79, 126, 325, 472
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 107
AoxI GGCC 5 cut(s) 6, 30, 133, 161, 202
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 2 cut(s) 31, 268
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 211
AsuII TTCGAA 1 cut(s) 460
AsuNHI GCTAGC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 387
BccI CCATC 1 cut(s) 497
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 1 cut(s) 284
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 2 cut(s) 123, 159
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
Bme1390I CCNGG 2 cut(s) 206, 284
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 31, 268
BmiI GGNNCC 2 cut(s) 33, 215
BmrFI CCNGG 2 cut(s) 206, 284
BmsI GCATC 1 cut(s) 94
BmtI GCTAGC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 460
BpuMI CCSGG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 4
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 382, 502
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 4 cut(s) 66, 99, 233, 291
BseRI GAGGAG 3 cut(s) 383, 386, 571
BseSI GKGCMC 1 cut(s) 216
BseX3I CGGCCG 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 5 cut(s) 8, 32, 135, 163, 204
BshNI GGYRCC 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 205
BsiSI CCGG 2 cut(s) 5, 205
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 416
BsmBI CGTCTC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 5 cut(s) 8, 32, 135, 163, 204
Bsp119I TTCGAA 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 2 cut(s) 12, 201
BspANI GGCC 5 cut(s) 8, 32, 135, 163, 204
BspCNI CTCAG 4 cut(s) 67, 100, 234, 292
BspLI GGNNCC 2 cut(s) 33, 215
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 460
BspT107I GGYRCC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 2 cut(s) 530, 548
BstAPI GCANNNNNTGC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 460
BstC8I GCNNGC 3 cut(s) 6, 124, 190
BstDEI CTNAG 4 cut(s) 75, 108, 242, 300
BstF5I GGATG 2 cut(s) 382, 502
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 1 cut(s) 61
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 4 cut(s) 113, 132, 198, 293
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 204, 282
BstSLI GKGCMC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 387
BstZI CGGCCG 1 cut(s) 202
BsuRI GGCC 5 cut(s) 8, 32, 135, 163, 204
BtsCI GGATG 2 cut(s) 382, 502
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 3 cut(s) 6, 124, 190
CaiI CAGNNNCTG 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 31, 268
CseI GACGC 1 cut(s) 433
Csp6I GTAC 2 cut(s) 48, 58
CviAII CATG 1 cut(s) 28
CviQI GTAC 2 cut(s) 48, 58
DdeI CTNAG 4 cut(s) 75, 108, 242, 300
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 2 cut(s) 6, 202
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 530, 548
EarI CTCTTC 2 cut(s) 530, 548
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 135
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 268
Eco52I CGGCCG 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 1 cut(s) 31
FaiI YATR 9 cut(s) 29, 69, 118, 120, 155, 408, 419, 444, 522
FatI CATG 1 cut(s) 27
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 2 cut(s) 389, 509
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 2 cut(s) 123, 159
GluI GCNGC 1 cut(s) 202
GsaI CCCAGC 1 cut(s) 329
HaeIII GGCC 5 cut(s) 8, 32, 135, 163, 204
HapII CCGG 2 cut(s) 5, 205
HgaI GACGC 1 cut(s) 433
Hin1II CATG 1 cut(s) 31
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 3 cut(s) 398, 410, 491
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 2 cut(s) 5, 205
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 8 cut(s) 45, 172, 243, 301, 403, 415, 496, 511
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 583
HpyAV CCTTC 6 cut(s) 12, 146, 256, 310, 331, 537
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 3 cut(s) 71, 116, 192
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 132, 198, 293
HpyF3I CTNAG 4 cut(s) 75, 108, 242, 300
HpySE526I ACGT 1 cut(s) 581
Hsp92II CATG 1 cut(s) 31
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 7 cut(s) 18, 87, 114, 218, 269, 296, 311
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 123, 159
MaeII ACGT 1 cut(s) 581
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 6 cut(s) 287, 392, 493, 544, 547, 565
MfeI CAATTG 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 2 cut(s) 51, 166
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 2 cut(s) 249, 354
MspI CCGG 2 cut(s) 5, 205
MspR9I CCNGG 2 cut(s) 206, 284
MunI CAATTG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 4 cut(s) 113, 132, 198, 293
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 206
NdeI CATATG 1 cut(s) 118
NdeII GATC 1 cut(s) 61
NgoMIV GCCGGC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 2 cut(s) 33, 215
NsiI ATGCAT 1 cut(s) 118
NspV TTCGAA 1 cut(s) 460
PceI AGGCCT 1 cut(s) 135
PctI GAATGC 1 cut(s) 118
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 398, 410
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 33, 215
PspPI GGNCC 2 cut(s) 31, 268
PspPPI RGGWCCY 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 107
RsaI GTAC 2 cut(s) 49, 59
RsaNI GTAC 2 cut(s) 48, 58
SaqAI TTAA 2 cut(s) 249, 354
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 2 cut(s) 31, 268
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 206, 284
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 1 cut(s) 94
SfuI TTCGAA 1 cut(s) 460
SinI GGWCC 1 cut(s) 268
Sse9I AATT 2 cut(s) 51, 166
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 2 cut(s) 12, 201
SspMI CTAG 2 cut(s) 123, 159
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 204, 282
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 1 cut(s) 584
TaqI TCGA 1 cut(s) 460
TasI AATT 2 cut(s) 51, 166
TatI WGTACW 1 cut(s) 47
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 2 cut(s) 398, 410
Tru1I TTAA 2 cut(s) 249, 354
Tru9I TTAA 2 cut(s) 249, 354
TscAI CASTG 1 cut(s) 391
TspDTI ATGAA 1 cut(s) 393
TspRI CASTG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 166
XspI CTAG 2 cut(s) 123, 159
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.