FvH4_3g43341

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004851
Physical Location & Seq
Forward (+)
36168023 .. 36169164
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43341.t1

Sequence Viewer

Length: 678 bp
ATGGAGGATGTCAAACGGCTCAGAGCTGAGACTTATGGCATTGATCCGGCTGTGGCTGAAAGTGTGATCCCCGGACTTGAGTTTGAGTCCTGCAATTTGAGGCAGGGTGACATGACAGTGTTGGAATATGGGCGGCTTTTCAATAGATCATATCGTTTTGTATCTCCCTTGGTGGCTAATGAGAGGGATAAAATCCACAAGTTTCAACAAGGATTAAGAGATGAACTCCGTGATATGTTAGTGGTTACCTTATTTACTGAGTTCAGTCAAGTATTTTTGGCCGCCATGAAGTATGAGGATAGGCTTTTGGAATGTGTACAACCATTGGAGGTGGGTTTCCCCAGCCAGAGTCTTTCCGAGAAGGCTAGTACTAGTTCGAGTTCCGCGGCTTTAATATGCACTAGATCTGAAAATTCAAGACCCGGCGCACTAAAAAGAAGACGTCGGGGTCGGAAGCGGAGATTTATCAAGCGCAATATGAAAAAGACCAATCAGTCTGGGGAGAGTGTTGGCGGTAATAGTAGAGCTCCTGTTCAGGGAGGCCGTCCACAGTGTCAGAGATGTGGCAGATACCATGATGGACAGTGCCAAGTAGGACTAGAAATGATAGGGAGTTCGGTATGTTATCAGTGTGGCCGCCATGGTCACTACTTGAGGCAGTGCCCTCAACTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

226

Amino Acids

25.49

Weight (kDa)

9.5

Isoelectric Point (pI)

64.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 447, 493
AatII GACGTC 1 cut(s) 445
AccII CGCG 1 cut(s) 386
AciI CCGC 7 cut(s) 133, 282, 384, 386, 457, 513, 637
AclWI GGATC 2 cut(s) 38, 61
AcoI YGGCCR 2 cut(s) 279, 634
AcsI RAATTY 1 cut(s) 412
AcyI GRCGYC 1 cut(s) 442
AfaI GTAC 2 cut(s) 318, 370
AfiI CCNNNNNNNGG 2 cut(s) 536, 670
AgsI TTSAA 3 cut(s) 142, 206, 417
AhlI ACTAGT 1 cut(s) 371
AluBI AGCT 2 cut(s) 26, 527
AluI AGCT 2 cut(s) 26, 527
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 38, 61
AoxI GGCC 4 cut(s) 279, 541, 634, 672
ApoI RAATTY 1 cut(s) 412
AspLEI GCGC 2 cut(s) 428, 474
AsuC2I CCSGG 2 cut(s) 72, 423
AsuHPI GGTGA 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 529
BccI CCATC 1 cut(s) 572
BceAI ACGGC 2 cut(s) 32, 528
BcnI CCSGG 2 cut(s) 72, 423
BcoDI GTCTC 1 cut(s) 23
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 5 cut(s) 366, 372, 402, 599, 676
BglII AGATCT 1 cut(s) 404
BisI GCNGC 4 cut(s) 134, 282, 387, 637
BlsI GCNGC 4 cut(s) 135, 283, 388, 638
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 2 cut(s) 72, 423
BmrFI CCNGG 2 cut(s) 72, 423
BpiI GAAGAC 1 cut(s) 445
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpuEI CTTGAG 2 cut(s) 98, 673
BpuMI CCSGG 2 cut(s) 72, 423
BsaHI GRCGYC 1 cut(s) 442
BsaJI CCNNGG 4 cut(s) 70, 168, 384, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 536, 670
Bse1I ACTGG 1 cut(s) 675
BseDI CCNNGG 4 cut(s) 70, 168, 384, 640
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 2 cut(s) 536, 670
BseMII CTCAG 3 cut(s) 18, 34, 249
BseNI ACTGG 1 cut(s) 675
BseSI GKGCMC 1 cut(s) 665
BseYI CCCAGC 1 cut(s) 341
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 4 cut(s) 281, 543, 636, 674
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 3 cut(s) 47, 72, 423
BslI CCNNNNNNNGG 2 cut(s) 536, 670
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 4 cut(s) 281, 543, 636, 674
Bsp1286I GDGCHC 2 cut(s) 529, 665
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 4 cut(s) 43, 66, 146, 404
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 7 cut(s) 133, 282, 384, 386, 457, 513, 637
BspANI GGCC 4 cut(s) 281, 543, 636, 674
BspCNI CTCAG 3 cut(s) 19, 33, 250
BspFNI CGCG 1 cut(s) 386
BspPI GGATC 2 cut(s) 38, 61
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 1 cut(s) 675
BssECI CCNNGG 4 cut(s) 70, 168, 384, 640
BssMI GATC 4 cut(s) 43, 66, 146, 404
BssNI GRCGYC 1 cut(s) 442
BssT1I CCWWGG 2 cut(s) 168, 640
Bst4CI ACNGT 3 cut(s) 118, 552, 585
BstACI GRCGYC 1 cut(s) 442
BstAUI TGTACA 1 cut(s) 316
BstDEI CTNAG 3 cut(s) 20, 27, 258
BstDSI CCRYGG 2 cut(s) 384, 640
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 2 cut(s) 428, 474
BstKTI GATC 4 cut(s) 46, 69, 149, 407
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 4 cut(s) 43, 66, 146, 404
BstPI GGTNACC 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 70, 421
BstSLI GKGCMC 1 cut(s) 665
BstUI CGCG 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 4 cut(s) 281, 543, 636, 674
BtgI CCRYGG 2 cut(s) 384, 640
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 5 cut(s) 123, 557, 590, 635, 665
CfoI GCGC 2 cut(s) 428, 474
Cfr42I CCGCGG 1 cut(s) 387
Csp6I GTAC 2 cut(s) 317, 369
CviAII CATG 4 cut(s) 112, 286, 575, 641
CviQI GTAC 2 cut(s) 317, 369
DdeI CTNAG 3 cut(s) 20, 27, 258
DpnI GATC 4 cut(s) 45, 68, 148, 406
DpnII GATC 4 cut(s) 43, 66, 146, 404
DrdI GACNNNNNNGTC 2 cut(s) 447, 493
DseDI GACNNNNNNGTC 2 cut(s) 447, 493
EaeI YGGCCR 2 cut(s) 279, 634
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 2 cut(s) 168, 640
Eco24I GRGCYC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 527
Eco91I GGTNACC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 527
EcoO65I GGTNACC 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 168, 640
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 168, 640
FaeI CATG 4 cut(s) 115, 289, 578, 644
FatI CATG 4 cut(s) 111, 285, 574, 640
Fnu4HI GCNGC 4 cut(s) 134, 282, 387, 637
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 4 cut(s) 134, 282, 387, 637
FspBI CTAG 5 cut(s) 366, 372, 402, 599, 676
GlaI GCGC 2 cut(s) 427, 473
GluI GCNGC 4 cut(s) 134, 282, 387, 637
GsaI CCCAGC 1 cut(s) 345
HaeIII GGCC 4 cut(s) 281, 543, 636, 674
HapII CCGG 3 cut(s) 47, 72, 423
HhaI GCGC 2 cut(s) 428, 474
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 4 cut(s) 115, 289, 578, 644
Hin6I GCGC 2 cut(s) 426, 472
HinP1I GCGC 2 cut(s) 426, 472
HinfI GANTC 2 cut(s) 86, 349
HpaII CCGG 3 cut(s) 47, 72, 423
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 317, 548
Hpy188I TCNGA 5 cut(s) 23, 358, 409, 453, 558
Hpy188III TCNNGA 1 cut(s) 417
Hpy8I GTNNAC 2 cut(s) 317, 548
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 3 cut(s) 118, 552, 585
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 2 cut(s) 93, 399
HpyF3I CTNAG 3 cut(s) 20, 27, 258
HpySE526I ACGT 1 cut(s) 442
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 4 cut(s) 115, 289, 578, 644
HspAI GCGC 2 cut(s) 426, 472
KspI CCGCGG 1 cut(s) 387
Kzo9I GATC 4 cut(s) 43, 66, 146, 404
LmnI GCTCC 1 cut(s) 532
MaeI CTAG 5 cut(s) 366, 372, 402, 599, 676
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 3 cut(s) 107, 244, 644
MalI GATC 4 cut(s) 45, 68, 148, 406
MboI GATC 4 cut(s) 43, 66, 146, 404
MboII GAAGA 1 cut(s) 450
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 2 cut(s) 529, 665
MluCI AATT 2 cut(s) 94, 412
MlyI GAGTC 2 cut(s) 95, 358
MmeI TCCRAC 2 cut(s) 102, 431
MnlI CCTC 7 cut(s) 93, 177, 289, 322, 533, 648, 675
MseI TTAA 2 cut(s) 215, 392
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 3 cut(s) 47, 72, 423
MspR9I CCNGG 2 cut(s) 72, 423
MvnI CGCG 1 cut(s) 386
NciI CCSGG 2 cut(s) 72, 423
NcoI CCATGG 1 cut(s) 640
NdeII GATC 4 cut(s) 43, 66, 146, 404
NlaIII CATG 4 cut(s) 115, 289, 578, 644
NmuCI GTSAC 2 cut(s) 107, 644
PkrI GCNGC 4 cut(s) 135, 283, 388, 638
PleI GAGTC 2 cut(s) 94, 357
PpsI GAGTC 2 cut(s) 94, 357
Psp124BI GAGCTC 1 cut(s) 529
PspEI GGTNACC 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 2 cut(s) 318, 370
RsaNI GTAC 2 cut(s) 317, 369
RseI CAYNNNNRTG 1 cut(s) 116
SacI GAGCTC 1 cut(s) 529
SacII CCGCGG 1 cut(s) 387
SaqAI TTAA 2 cut(s) 215, 392
SatI GCNGC 4 cut(s) 134, 282, 387, 637
Sau3AI GATC 4 cut(s) 43, 66, 146, 404
ScaI AGTACT 1 cut(s) 370
SchI GAGTC 2 cut(s) 95, 358
ScrFI CCNGG 2 cut(s) 72, 423
SduI GDGCHC 2 cut(s) 529, 665
SetI ASST 5 cut(s) 28, 251, 333, 445, 529
Sfr303I CCGCGG 1 cut(s) 387
SgrBI CCGCGG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 77, 652
SmoI CTYRAG 2 cut(s) 77, 652
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 2 cut(s) 94, 412
SsiI CCGC 7 cut(s) 133, 282, 384, 386, 457, 513, 637
SspMI CTAG 5 cut(s) 366, 372, 402, 599, 676
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 2 cut(s) 70, 421
StyI CCWWGG 2 cut(s) 168, 640
TaaI ACNGT 3 cut(s) 118, 552, 585
TaiI ACGT 1 cut(s) 445
TaqI TCGA 1 cut(s) 377
TasI AATT 2 cut(s) 94, 412
TatI WGTACW 2 cut(s) 316, 368
TauI GCSGC 4 cut(s) 136, 284, 389, 639
Tru1I TTAA 2 cut(s) 215, 392
Tru9I TTAA 2 cut(s) 215, 392
TscAI CASTG 5 cut(s) 123, 557, 590, 635, 665
TseFI GTSAC 2 cut(s) 107, 644
Tsp45I GTSAC 2 cut(s) 107, 644
TspDTI ATGAA 3 cut(s) 237, 302, 494
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 5 cut(s) 123, 557, 590, 635, 665
XapI RAATTY 1 cut(s) 412
XspI CTAG 5 cut(s) 366, 372, 402, 599, 676
ZraI GACGTC 1 cut(s) 443
ZrmI AGTACT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.