Rh1AG309600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004851
Physical Location & Seq
Reverse (-)
54333739 .. 54357845
24107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG309600.1

Sequence Viewer

Length: 297 bp
ATGAAAGATCTCTGTGGTTCTCACGGATCCATGAGTACCATAGGAGACATCCAGCTGCACGCACTAGTTGCTGATGCCAATGAGGAACATGAAGCACTGCTCAAACAGGAGCCTCAAGTGGAGAGATGGCTTTTCTTGGCGTGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCCATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCAGCATTGAGACAGCGGTTGCTGCCGCAAGGCTTGGCGACACCATTCTAATTTCAGTAGGGGGAAAGCATCTTGCTTCTGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

98

Amino Acids

10.71

Weight (kDa)

5.4

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 224, 234
AclWI GGATC 4 cut(s) 21, 34, 168, 179
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 37
AgsI TTSAA 1 cut(s) 170
AhlI ACTAGT 1 cut(s) 64
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 2 cut(s) 39, 212
AlwI GGATC 4 cut(s) 21, 34, 168, 179
ApeKI GCWGC 3 cut(s) 55, 160, 230
AsuHPI GGTGA 1 cut(s) 137
BamHI GGATCC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 3 cut(s) 42, 147, 217
BccI CCATC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 39, 212
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 1 cut(s) 65
BglII AGATCT 1 cut(s) 7
BisI GCNGC 4 cut(s) 56, 161, 231, 234
BlsI GCNGC 4 cut(s) 57, 162, 232, 235
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 3 cut(s) 28, 111, 195
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 64, 286
BpiI GAAGAC 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 48
BseXI GCAGC 3 cut(s) 42, 147, 217
BseYI CCCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 41
BsmAI GTCTC 2 cut(s) 39, 212
Bsp143I GATC 4 cut(s) 7, 26, 173, 184
BspACI CCGC 2 cut(s) 224, 234
BspLI GGNNCC 3 cut(s) 28, 111, 195
BspPI GGATC 4 cut(s) 21, 34, 168, 179
BssMI GATC 4 cut(s) 7, 26, 173, 184
BssNI GRCGYC 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 60
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 4 cut(s) 10, 29, 176, 187
BstMAI GTCTC 2 cut(s) 39, 212
BstMBI GATC 4 cut(s) 7, 26, 173, 184
BstMWI GCNNNNNNNGC 2 cut(s) 68, 230
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 3 cut(s) 42, 147, 217
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 3 cut(s) 7, 26, 184
BstYI RGATCY 3 cut(s) 7, 26, 184
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 60
CseI GACGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 31, 89
CviJI RGCY 6 cut(s) 55, 112, 130, 160, 196, 241
CviKI_1 RGCY 6 cut(s) 55, 112, 130, 160, 196, 241
CviQI GTAC 1 cut(s) 36
DpnI GATC 4 cut(s) 9, 28, 175, 186
DpnII GATC 4 cut(s) 7, 26, 173, 184
EcoRII CCWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 34, 92
FaiI YATR 3 cut(s) 32, 41, 90
FatI CATG 2 cut(s) 30, 88
Fnu4HI GCNGC 4 cut(s) 56, 161, 231, 234
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 4 cut(s) 56, 161, 231, 234
FspBI CTAG 1 cut(s) 65
GluI GCNGC 4 cut(s) 56, 161, 231, 234
GsaI CCCAGC 1 cut(s) 213
HgaI GACGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 2 cut(s) 34, 92
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 230
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 2 cut(s) 34, 92
Kzo9I GATC 4 cut(s) 7, 26, 173, 184
LmnI GCTCC 2 cut(s) 109, 193
LpnPI CCDG 5 cut(s) 65, 92, 183, 210, 223
Lsp1109I GCAGC 3 cut(s) 42, 147, 217
LweI GCATC 2 cut(s) 64, 286
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 143
MalI GATC 4 cut(s) 9, 28, 175, 186
MboI GATC 4 cut(s) 7, 26, 173, 184
MboII GAAGA 1 cut(s) 196
MflI RGATCY 3 cut(s) 7, 26, 184
MluCI AATT 1 cut(s) 258
MnlI CCTC 3 cut(s) 76, 123, 159
MseI TTAA 2 cut(s) 180, 295
MspA1I CMGCKG 2 cut(s) 55, 224
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 68, 230
NdeII GATC 4 cut(s) 7, 26, 173, 184
NlaIII CATG 2 cut(s) 34, 92
NlaIV GGNNCC 3 cut(s) 28, 111, 195
NmuCI GTSAC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 57, 162, 232, 235
Psp6I CCWGG 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 28, 111, 195
PsuI RGATCY 3 cut(s) 7, 26, 184
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 180, 295
SatI GCNGC 4 cut(s) 56, 161, 231, 234
Sau3AI GATC 4 cut(s) 7, 26, 173, 184
ScrFI CCNGG 1 cut(s) 198
SetI ASST 1 cut(s) 57
SfaNI GCATC 2 cut(s) 64, 286
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
SpeI ACTAGT 1 cut(s) 64
Sse9I AATT 1 cut(s) 258
SsiI CCGC 2 cut(s) 224, 234
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 196
TasI AATT 1 cut(s) 258
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 180, 295
Tru9I TTAA 2 cut(s) 180, 295
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 3 cut(s) 55, 160, 230
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 17, 105
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 102
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.