Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004851

Physical Location & Seq

Genomic Coordinates Reverse (-)

65466900 .. 65469199

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATTGATTCGCCTTCAGTGAGATTGGAACTTATCACTTGCCTTCAGACGATTGATAGTAACAACTATCCTGAGACTGTGAATTGTATGTTTATCATTAATGCTGGTTCTGGTTTTAGAATGTTGTGGAGCACTGTGAAGTCCTTCCTTGATCCCAAGACAACTGAAAAGATTAATGTCCTTGGTGACAAGAGCAAGTTACTTCAAATAATTGATGCTAGATGGCCTTTCTTGGCGTGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCAGCATTGAGACAGCGGTTGCTGCCGCAAGGCTTGGCGACACCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

117

Amino Acids

13.37

Weight (kDa)

9.5

Isoelectric Point (pI)

67.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	16 - 72	7.2e-13	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43341 FvH4_3g43342
rosa_chinensis	RchiOBHm_Chr3g0497221
rosa_laevigata	RLG00000022469
rosa_multiflora	Rmu_sc0000869.1_g000018
rosa_roxburghii	Rroxscaffold_4G00331510 Rroxscaffold_6G00388250 Rroxscaffold_6G00421640
rosa_rugosa	Rorug01G0131600.1 Rorug03G0292000 Rorug04G0439100 Rorug07G0306600
rosa_samantha	Rh1AG309600 Rh1BG121000 Rh1BG422000 Rh1CG290300 Rh1DG454700 Rh2AG238100 Rh2CG303800 Rh2CG398500 Rh2DG245600 Rh2DG339900 Rh3BG373300 Rh3CG152000 Rh3DG153000 Rh4BG233100 Rh6DG139100 Rh6DG164400 Rh7AG422700
rosa_wichuraiana	Rw1G027500 Rw3G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	319, 329
AclWI	GGATC	2 cut(s)	146, 274
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	206, 266
AjnI	CCWGG	1 cut(s)	291
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	2 cut(s)	68, 307
AlwI	GGATC	2 cut(s)	146, 274
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	256, 325
AseI	ATTAAT	2 cut(s)	99, 174
Asp700I	GAANNNNTTC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	197, 233
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	243, 312
BccI	CCATC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	68, 307
BfaI	CTAG	1 cut(s)	219
BisI	GCNGC	3 cut(s)	257, 326, 329
BlsI	GCNGC	3 cut(s)	258, 327, 330
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	243, 312
BseYI	CCCAGC	1 cut(s)	304
BshFI	GGCC	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	134
BsmAI	GTCTC	2 cut(s)	68, 307
BsnI	GGCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	151, 269, 279
BspACI	CCGC	2 cut(s)	319, 329
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	290
BspPI	GGATC	2 cut(s)	146, 274
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	151, 269, 279
BssNI	GRCGYC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	79, 136
BstACI	GRCGYC	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	72
BstKTI	GATC	3 cut(s)	154, 272, 282
BstMAI	GTCTC	2 cut(s)	68, 307
BstMBI	GATC	3 cut(s)	151, 269, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	243, 312
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	24, 132
CseI	GACGC	1 cut(s)	285
CviJI	RGCY	4 cut(s)	226, 256, 291, 336
CviKI_1	RGCY	4 cut(s)	226, 256, 291, 336
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	3 cut(s)	153, 271, 281
DpnII	GATC	3 cut(s)	151, 269, 279
Eco130I	CCWWGG	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaiI	YATR	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	257, 326, 329
Fsp4HI	GCNGC	3 cut(s)	257, 326, 329
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	3 cut(s)	257, 326, 329
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	226
HgaI	GACGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	296
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	197, 233
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	24, 53, 154
HpyCH4III	ACNGT	2 cut(s)	79, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	296
Kzo9I	GATC	3 cut(s)	151, 269, 279
LmnI	GCTCC	2 cut(s)	129, 288
LpnPI	CCDG	6 cut(s)	84, 90, 96, 278, 305, 318
Lsp1109I	GCAGC	2 cut(s)	243, 312
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	4 cut(s)	59, 185, 198, 239
MalI	GATC	3 cut(s)	153, 271, 281
MboI	GATC	3 cut(s)	151, 269, 279
MboII	GAAGA	1 cut(s)	291
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	2 cut(s)	82, 210
MnlI	CCTC	1 cut(s)	255
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	3 cut(s)	99, 174, 275
MspA1I	CMGCKG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	3 cut(s)	151, 269, 279
NlaIV	GGNNCC	1 cut(s)	290
NmuCI	GTSAC	2 cut(s)	185, 239
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	258, 327, 330
PshBI	ATTAAT	2 cut(s)	99, 174
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	99, 174, 275
SatI	GCNGC	3 cut(s)	257, 326, 329
Sau3AI	GATC	3 cut(s)	151, 269, 279
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	205
Sse9I	AATT	2 cut(s)	82, 210
SsiI	CCGC	2 cut(s)	319, 329
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	79, 136
TasI	AATT	2 cut(s)	82, 210
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	99, 174, 275
Tru9I	TTAA	3 cut(s)	99, 174, 275
TscAI	CASTG	2 cut(s)	24, 139
TseFI	GTSAC	2 cut(s)	185, 239
TseI	GCWGC	2 cut(s)	256, 325
Tsp45I	GTSAC	2 cut(s)	185, 239
TspRI	CASTG	2 cut(s)	24, 139
VspI	ATTAAT	2 cut(s)	99, 174
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.