RLG00000022469

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004851
Physical Location & Seq
Forward (+)
1114953 .. 1116799
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022469

Sequence Viewer

Length: 696 bp
ATGGAGCAAGTCAAACAAACCGGAGGTAAGACCTATGCCATCAATCCGGCTATGGCTAAAAGTTTGATCACCCGACTTGAGAGTGAGTTATTGCATTTGAGGCAGGGTGACATGACGGTGTTGGAATACGGGCGACGTTTCAATAGCTTGTATCGTTTTGCACCTGCCTTGGTGGCTAATGAGAGGGATAAAATCCACAAATTTCTACAAGGACTACGCGATCAACTCCGTGTTATGTTAGCGGCTACCTTATTTACCGATTTCAGTCAAGTATTTTTGGCGGCCATGAAGTGCGAGGACAGACTTTTGAAATGTGTACAACCATTAGAGGCGGGTTCCCCTTGCCCAAGTCCATCCGAGAGGGCTACCGCTATTTCGAGGTCCGAGGCTTTGACCGGTATTAGACCTGACAGTTTTGGGTCCGACTCACGACAGAGTTACAGAAGACGTGAACGGAGGCGGGGCAAGCACTATAGGCGACAAACCAAACAGTCCAGGAGTAGTGTTAGTGGTTATAGTAGAGGTTCTAGAAGACTTCCCATTCAGAGAGACCGTCCACAATGTCAGACATGTGGCAGACACCATGATGGACAGTGCCAAGTAGGGAGTGAGGTATGTTTTCATTGTGGCCAACATGGTCACTACTTGAGGAACTGCCCTCAACTGACTCAGGGAGCTACTTCAGTGCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

232

Amino Acids

26.23

Weight (kDa)

10.05

Isoelectric Point (pI)

69.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 24 - 74 1.9e-09 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 172
Acc36I ACCTGC 1 cut(s) 172
AccII CGCG 1 cut(s) 219
AciI CCGC 5 cut(s) 242, 281, 332, 369, 460
AcoI YGGCCR 2 cut(s) 282, 628
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 1 cut(s) 318
AflIII ACRYGT 1 cut(s) 569
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 142, 310
AjiI CACGTC 1 cut(s) 449
AjnI CCWGG 1 cut(s) 494
AluBI AGCT 2 cut(s) 147, 677
AluI AGCT 2 cut(s) 147, 677
Alw26I GTCTC 1 cut(s) 543
AoxI GGCC 2 cut(s) 282, 628
ApoI RAATTY 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 381, 420
AsuHPI GGTGA 2 cut(s) 61, 119
AvaII GGWCC 2 cut(s) 381, 420
BaeGI GKGCMC 1 cut(s) 690
BalI TGGCCA 1 cut(s) 630
BbsI GAAGAC 2 cut(s) 451, 538
BccI CCATC 3 cut(s) 47, 361, 581
BciT130I CCWGG 1 cut(s) 496
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 472
BfuAI ACCTGC 1 cut(s) 172
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 2 cut(s) 243, 282
BlsI GCNGC 2 cut(s) 244, 283
Bme1390I CCNGG 1 cut(s) 496
Bme18I GGWCC 2 cut(s) 381, 420
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 381, 420
BmiI GGNNCC 2 cut(s) 337, 421
BmrFI CCNGG 1 cut(s) 496
BpiI GAAGAC 2 cut(s) 451, 538
BpuEI CTTGAG 2 cut(s) 98, 667
BsaI GGTCTC 1 cut(s) 543
BsaJI CCNNGG 2 cut(s) 168, 384
BsaWI WCCGGW 2 cut(s) 20, 395
Bse118I RCCGGY 1 cut(s) 395
BseBI CCWGG 1 cut(s) 496
BseDI CCNNGG 2 cut(s) 168, 384
BseGI GGATG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 683
BseSI GKGCMC 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 284, 630
BshTI ACCGGT 1 cut(s) 395
BsiSI CCGG 3 cut(s) 21, 47, 396
BsmAI GTCTC 1 cut(s) 543
BsnI GGCC 2 cut(s) 284, 630
Bso31I GGTCTC 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 690
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 66, 220
BspACI CCGC 5 cut(s) 242, 281, 332, 369, 460
BspANI GGCC 2 cut(s) 284, 630
BspCNI CTCAG 1 cut(s) 682
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 337, 421
BspMI ACCTGC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 168, 384
BssMI GATC 2 cut(s) 66, 220
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 496
Bst4CI ACNGT 5 cut(s) 118, 413, 492, 554, 594
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 669
BstF5I GGATG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 2 cut(s) 69, 223
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 2 cut(s) 66, 220
BstMWI GCNNNNNNNGC 4 cut(s) 100, 173, 466, 475
BstNI CCWGG 1 cut(s) 496
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 494
BstSFI CTRYAG 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 690
BstUI CGCG 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 451, 538
BsuRI GGCC 2 cut(s) 284, 630
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 2 cut(s) 599, 690
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 2 cut(s) 381, 420
Csp6I GTAC 1 cut(s) 317
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 5 cut(s) 112, 286, 570, 584, 635
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 669
DpnI GATC 2 cut(s) 68, 222
DpnII GATC 2 cut(s) 66, 220
EaeI YGGCCR 2 cut(s) 282, 628
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 543
Eco47I GGWCC 2 cut(s) 381, 420
Eco57I CTGAAG 1 cut(s) 666
EcoRII CCWGG 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 5 cut(s) 115, 289, 573, 587, 638
FatI CATG 5 cut(s) 111, 285, 569, 583, 634
FauI CCCGC 2 cut(s) 325, 453
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 243, 282
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 2 cut(s) 243, 282
FspBI CTAG 1 cut(s) 528
GluI GCNGC 2 cut(s) 243, 282
HaeIII GGCC 2 cut(s) 284, 630
HapII CCGG 3 cut(s) 21, 47, 396
Hin1II CATG 5 cut(s) 115, 289, 573, 587, 638
HinfI GANTC 2 cut(s) 425, 667
HpaII CCGG 3 cut(s) 21, 47, 396
HphI GGTGA 2 cut(s) 61, 119
Hpy166II GTNNAC 3 cut(s) 317, 452, 557
Hpy188I TCNGA 5 cut(s) 358, 385, 424, 546, 567
Hpy188III TCNNGA 2 cut(s) 429, 528
Hpy8I GTNNAC 3 cut(s) 317, 452, 557
Hpy99I CGWCG 1 cut(s) 138
HpyCH4III ACNGT 5 cut(s) 118, 413, 492, 554, 594
HpyCH4IV ACGT 2 cut(s) 136, 448
HpyCH4V TGCA 2 cut(s) 94, 161
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 173, 466, 475
HpyF3I CTNAG 1 cut(s) 669
HpySE526I ACGT 2 cut(s) 136, 448
Hsp92II CATG 5 cut(s) 115, 289, 573, 587, 638
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 2 cut(s) 66, 220
LmnI GCTCC 2 cut(s) 4, 674
LpnPI CCDG 9 cut(s) 34, 60, 89, 177, 409, 420, 481, 508, 656
MaeI CTAG 1 cut(s) 528
MaeII ACGT 2 cut(s) 136, 448
MaeIII GTNAC 3 cut(s) 107, 437, 638
MalI GATC 2 cut(s) 68, 222
MboI GATC 2 cut(s) 66, 220
MboII GAAGA 2 cut(s) 456, 543
MhlI GDGCHC 1 cut(s) 690
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 2 cut(s) 419, 661
MmeI TCCRAC 2 cut(s) 102, 447
Mox20I TGGCCA 1 cut(s) 630
MscI TGGCCA 1 cut(s) 630
MslI CAYNNNNRTG 2 cut(s) 116, 585
Msp20I TGGCCA 1 cut(s) 630
MspI CCGG 3 cut(s) 21, 47, 396
MspR9I CCNGG 1 cut(s) 496
MvaI CCWGG 1 cut(s) 496
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 4 cut(s) 100, 173, 466, 475
NdeII GATC 2 cut(s) 66, 220
NlaIII CATG 5 cut(s) 115, 289, 573, 587, 638
NlaIV GGNNCC 2 cut(s) 337, 421
NmuCI GTSAC 2 cut(s) 107, 638
NspI RCATGY 1 cut(s) 573
PaqCI CACCTGC 1 cut(s) 172
PciI ACATGT 1 cut(s) 569
PfoI TCCNGGA 1 cut(s) 494
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 2 cut(s) 244, 283
PleI GAGTC 2 cut(s) 419, 661
PpsI GAGTC 2 cut(s) 419, 661
PscI ACATGT 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 494
PspGI CCWGG 1 cut(s) 494
PspN4I GGNNCC 2 cut(s) 337, 421
PspPI GGNCC 2 cut(s) 381, 420
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 2 cut(s) 116, 585
SatI GCNGC 2 cut(s) 243, 282
Sau3AI GATC 2 cut(s) 66, 220
Sau96I GGNCC 2 cut(s) 381, 420
SchI GAGTC 2 cut(s) 419, 661
ScrFI CCNGG 1 cut(s) 496
SduI GDGCHC 1 cut(s) 690
SfcI CTRYAG 1 cut(s) 472
SinI GGWCC 2 cut(s) 381, 420
SmiMI CAYNNNNRTG 2 cut(s) 116, 585
SmlI CTYRAG 2 cut(s) 77, 646
SmoI CTYRAG 2 cut(s) 77, 646
Sse9I AATT 1 cut(s) 200
SsiI CCGC 5 cut(s) 242, 281, 332, 369, 460
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 494
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 5 cut(s) 118, 413, 492, 554, 594
TaiI ACGT 2 cut(s) 139, 451
TaqI TCGA 1 cut(s) 377
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 245, 284
TscAI CASTG 2 cut(s) 599, 690
TseFI GTSAC 2 cut(s) 107, 638
Tsp45I GTSAC 2 cut(s) 107, 638
TspDTI ATGAA 2 cut(s) 302, 611
TspGWI ACGGA 2 cut(s) 218, 469
TspRI CASTG 2 cut(s) 599, 690
VpaK11BI GGWCC 2 cut(s) 381, 420
XapI RAATTY 1 cut(s) 200
XbaI TCTAGA 1 cut(s) 527
XceI RCATGY 1 cut(s) 573
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.