Rh1DG454700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004851
Physical Location & Seq
Forward (+)
66088531 .. 66095139
6609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG454700.1

Sequence Viewer

Length: 378 bp
ATGCTCAATTACGTACATTTTATGATGATGATAAATGAACGAACAGTTGGTGAATACAGTGAAGAGGAGATACTTGAGGCAAACAAAGAACTCAATGAAGACGTAAAGCCCGAGCTCAAGGAATTTGCACGATGTGGTATTGAGTTGATCATTGACCATTCTTTTGTGGACTACACTTGTTCTAGCTCCACTGATAGTTGTCTGCAATGGGTTTCAATAACATCTACAACAAAGATACAGGTGCTTCAAAAAAATGAGGCCTTGACTGGACAAGAAGGCATTGATAGGGGAATGATCTGCGTCAATTTGTTTGTTTATTACCTTGACCCCTGGCAAGGATCCAAGGATAGCATGCTTGGTGAGCTTACAAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.34

Weight (kDa)

4.37

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 333, 346
AcsI RAATTY 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 216, 248
AjnI CCWGG 1 cut(s) 329
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 4 cut(s) 115, 186, 364, 372
AluI AGCT 4 cut(s) 115, 186, 364, 372
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 2 cut(s) 333, 346
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsuHPI GGTGA 2 cut(s) 62, 371
AvaI CYCGRG 1 cut(s) 110
BamHI GGATCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 117
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 331
BclI TGATCA 1 cut(s) 147
BfaI CTAG 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 95, 101
BsaAI YACGTR 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 329, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 329, 342
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 335
BsnI GGCC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 147, 294, 338
BspANI GGCC 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 2 cut(s) 333, 346
BsrDI GCAATG 1 cut(s) 212
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 329, 342
BssMI GATC 3 cut(s) 147, 294, 338
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 46, 59
Bst6I CTCTTC 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 353
BstKTI GATC 3 cut(s) 150, 297, 341
BstMBI GATC 3 cut(s) 147, 294, 338
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 329
BstSNI TACGTA 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuRI GGCC 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 64, 189
Cac8I GCNNGC 1 cut(s) 353
CseI GACGC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 14
CviAII CATG 1 cut(s) 352
CviJI RGCY 6 cut(s) 109, 115, 186, 260, 364, 372
CviKI_1 RGCY 6 cut(s) 109, 115, 186, 260, 364, 372
CviQI GTAC 1 cut(s) 14
DpnI GATC 3 cut(s) 149, 296, 340
DpnII GATC 3 cut(s) 147, 294, 338
DraIII CACNNNGTG 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 115
Eco105I TACGTA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 342
Eco147I AGGCCT 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 1 cut(s) 355
FaiI YATR 2 cut(s) 23, 353
FatI CATG 1 cut(s) 351
FbaI TGATCA 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 117
FspBI CTAG 1 cut(s) 183
HaeIII GGCC 1 cut(s) 260
HgaI GACGC 1 cut(s) 289
Hin1II CATG 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 370
HphI GGTGA 2 cut(s) 62, 371
Hpy166II GTNNAC 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 46, 59
HpyCH4IV ACGT 2 cut(s) 12, 102
HpyCH4V TGCA 2 cut(s) 128, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpySE526I ACGT 2 cut(s) 12, 102
Hsp92II CATG 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 3 cut(s) 147, 294, 338
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 4 cut(s) 224, 252, 316, 343
MaeI CTAG 1 cut(s) 183
MaeII ACGT 2 cut(s) 12, 102
MalI GATC 3 cut(s) 149, 296, 340
MboI GATC 3 cut(s) 147, 294, 338
MboII GAAGA 2 cut(s) 74, 110
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 3 cut(s) 7, 122, 304
MnlI CCTC 3 cut(s) 58, 70, 250
MspR9I CCNGG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeII GATC 3 cut(s) 147, 294, 338
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 1 cut(s) 340
NspI RCATGY 1 cut(s) 355
PaeI GCATGC 1 cut(s) 355
PceI AGGCCT 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 108
Ppu21I YACGTR 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 340
PsuI RGATCY 1 cut(s) 338
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SacI GAGCTC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 147, 294, 338
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 1 cut(s) 117
SetI ASST 8 cut(s) 15, 105, 117, 188, 243, 324, 366, 374
SmlI CTYRAG 2 cut(s) 74, 116
SmoI CTYRAG 2 cut(s) 74, 116
SnaBI TACGTA 1 cut(s) 13
SphI GCATGC 1 cut(s) 355
Sse9I AATT 3 cut(s) 7, 122, 304
SseBI AGGCCT 1 cut(s) 260
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 117
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 46, 59
TaiI ACGT 2 cut(s) 15, 105
TasI AATT 3 cut(s) 7, 122, 304
TscAI CASTG 2 cut(s) 64, 196
TspDTI ATGAA 2 cut(s) 51, 111
TspRI CASTG 2 cut(s) 64, 196
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 355
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.