FvH4_3g43342

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004851
Physical Location & Seq
Forward (+)
36175787 .. 36176623
837 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43342.t1

Sequence Viewer

Length: 837 bp
ATGTCGCTACATTCAGGCATTTGTTCTGATTACAGTATGGAGGATGTCAAATGGCTCAGAGCTGAGACTTATGGCATTGATCCTGCTGTGGCTGAAAGTGTGATCCCCGGACTTGAGTTTGAGTCCTTCAATTTGAGGCAGGGTGACATGACAGTGTTGGAATATGGGCGGCTTTTCAATAGATCATATCATTTTGCATCTCCCTTGGTGGCTAATGAGAGGGATAAAATCCACAAGTTTCTACAAGGATTAAGACATGAACTCCGTGATATGTTAGTGGTTACCTTATTTACTGAGTTCAGTCAAGTATTTTTGGCCGCCATGAAATATGAGGATAGGCTTTTGGAATGTGTACAACCATTGGAGGTGGGTAGCCAGGGTCCTTCCGAGAAGGCTAGTACTAGTTCGAGTTCCGCAGCTTTAACATGCATTAGACCTGAAAATTCAAGACCTGGCTCACTAAAAAGAAGACGTGAGCGGAGGCGGAGCATTCTGAAGCGCCATAAGAAAAAGACCAATCAGTCTGGGGGCAGTGTTGCAAGTTCCGCGGCTTTAACATGCATTAGACCTGAAAATTCAAGACCCGGCTCACTAAAAAGAGGACGTGAGCGGAGGTGGAGCATTCTGAACCGCCGTAAGAAAAAGACCAATCAGTCTGGGGGCAGTGTTGGCGGTAATAGTAGAGCTCCTGTTCAGGGAGACCGTCCACAGTGTCAGAGATGTAGCAGATACCATGATGGACAGTGCCAAGTGGGACTACAAATGATAGGGAGTTCGGTATGTTATCAGTGTGGCTGCCATGGTCACTACTTGAGGCAGTGCCCTCAACTGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

279

Amino Acids

31.28

Weight (kDa)

9.72

Isoelectric Point (pI)

67.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 520, 652
AccBSI CCGCTC 2 cut(s) 478, 610
AccII CGCG 1 cut(s) 548
AclWI GGATC 2 cut(s) 74, 97
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 2 cut(s) 442, 574
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 2 cut(s) 354, 400
AfiI CCNNNNNNNGG 1 cut(s) 695
AgsI TTSAA 4 cut(s) 130, 178, 447, 579
AhlI ACTAGT 1 cut(s) 401
AjiI CACGTC 2 cut(s) 473, 605
AjnI CCWGG 2 cut(s) 375, 451
AluBI AGCT 3 cut(s) 62, 419, 686
AluI AGCT 3 cut(s) 62, 419, 686
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 2 cut(s) 59, 693
AlwI GGATC 2 cut(s) 74, 97
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 2 cut(s) 416, 795
ApoI RAATTY 2 cut(s) 442, 574
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 380
AsuC2I CCSGG 2 cut(s) 108, 585
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 824
BanII GRGCYC 1 cut(s) 688
BbsI GAAGAC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 688
BbvI GCAGC 2 cut(s) 428, 782
BccI CCATC 1 cut(s) 731
BceAI ACGGC 1 cut(s) 618
BciT130I CCWGG 2 cut(s) 377, 453
BcnI CCSGG 2 cut(s) 108, 585
BcoDI GTCTC 2 cut(s) 59, 693
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 396, 402
BfoI RGCGCY 1 cut(s) 502
BisI GCNGC 5 cut(s) 170, 318, 417, 549, 796
BlsI GCNGC 5 cut(s) 171, 319, 418, 550, 797
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 4 cut(s) 108, 377, 453, 585
Bme18I GGWCC 1 cut(s) 380
BmgBI CACGTC 2 cut(s) 473, 605
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 4 cut(s) 108, 377, 453, 585
BmsI GCATC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 475
BpuEI CTTGAG 2 cut(s) 134, 832
BpuMI CCSGG 2 cut(s) 108, 585
BsaI GGTCTC 1 cut(s) 693
BsaJI CCNNGG 5 cut(s) 106, 204, 376, 546, 799
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 695
BseBI CCWGG 2 cut(s) 377, 453
BseDI CCNNGG 5 cut(s) 106, 204, 376, 546, 799
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 3 cut(s) 54, 70, 285
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 2 cut(s) 428, 782
Bsh1236I CGCG 1 cut(s) 548
BshFI GGCC 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 688
BsiSI CCGG 2 cut(s) 108, 585
BslFI GGGAC 1 cut(s) 768
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 2 cut(s) 59, 693
BsmFI GGGAC 1 cut(s) 768
BsmI GAATGC 2 cut(s) 489, 621
BsnI GGCC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 693
Bsp1286I GDGCHC 2 cut(s) 688, 824
Bsp1407I TGTACA 1 cut(s) 352
Bsp143I GATC 3 cut(s) 79, 102, 182
Bsp19I CCATGG 1 cut(s) 799
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 3 cut(s) 55, 69, 286
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 1 cut(s) 381
BspPI GGATC 2 cut(s) 74, 97
BspTNI GGTCTC 1 cut(s) 693
BsrBI CCGCTC 2 cut(s) 478, 610
BsrGI TGTACA 1 cut(s) 352
BssECI CCNNGG 5 cut(s) 106, 204, 376, 546, 799
BssMI GATC 3 cut(s) 79, 102, 182
BssT1I CCWWGG 2 cut(s) 204, 799
Bst2UI CCWGG 2 cut(s) 377, 453
Bst4CI ACNGT 5 cut(s) 35, 154, 704, 711, 744
BstAUI TGTACA 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 56, 63, 294
BstDSI CCRYGG 2 cut(s) 546, 799
BstEII GGTNACC 1 cut(s) 280
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 548
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 3 cut(s) 82, 105, 185
BstMAI GTCTC 2 cut(s) 59, 693
BstMBI GATC 3 cut(s) 79, 102, 182
BstMWI GCNNNNNNNGC 2 cut(s) 545, 669
BstNI CCWGG 2 cut(s) 377, 453
BstNSI RCATGY 2 cut(s) 429, 561
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 4 cut(s) 106, 375, 451, 583
BstSLI GKGCMC 1 cut(s) 824
BstUI CGCG 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 428, 782
BstV2I GAAGAC 1 cut(s) 475
BsuRI GGCC 1 cut(s) 317
BtgI CCRYGG 2 cut(s) 546, 799
BtrI CACGTC 2 cut(s) 473, 605
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 3 cut(s) 538, 670, 824
BtsIMutI CAGTG 7 cut(s) 159, 538, 670, 716, 749, 794, 824
CfoI GCGC 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 380
Cfr42I CCGCGG 1 cut(s) 549
Csp6I GTAC 2 cut(s) 353, 399
CviAII CATG 7 cut(s) 148, 257, 322, 426, 558, 734, 800
CviQI GTAC 2 cut(s) 353, 399
DdeI CTNAG 3 cut(s) 56, 63, 294
DpnI GATC 3 cut(s) 81, 104, 184
DpnII GATC 3 cut(s) 79, 102, 182
DrdI GACNNNNNNGTC 2 cut(s) 520, 652
DseDI GACNNNNNNGTC 2 cut(s) 520, 652
EaeI YGGCCR 1 cut(s) 315
EciI GGCGGA 1 cut(s) 499
Ecl136II GAGCTC 1 cut(s) 686
Eco130I CCWWGG 2 cut(s) 204, 799
Eco24I GRGCYC 1 cut(s) 688
Eco31I GGTCTC 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 686
Eco57I CTGAAG 1 cut(s) 515
Eco91I GGTNACC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 686
EcoO109I RGGNCCY 1 cut(s) 380
EcoO65I GGTNACC 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 375, 451
EcoT14I CCWWGG 2 cut(s) 204, 799
EcoT22I ATGCAT 2 cut(s) 431, 563
EcoT38I GRGCYC 1 cut(s) 688
ErhI CCWWGG 2 cut(s) 204, 799
FaeI CATG 7 cut(s) 151, 260, 325, 429, 561, 737, 803
FaqI GGGAC 1 cut(s) 768
FatI CATG 7 cut(s) 147, 256, 321, 425, 557, 733, 799
Fnu4HI GCNGC 5 cut(s) 170, 318, 417, 549, 796
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 688
Fsp4HI GCNGC 5 cut(s) 170, 318, 417, 549, 796
FspBI CTAG 2 cut(s) 396, 402
GlaI GCGC 1 cut(s) 500
GluI GCNGC 5 cut(s) 170, 318, 417, 549, 796
HaeII RGCGCY 1 cut(s) 502
HaeIII GGCC 1 cut(s) 317
HapII CCGG 2 cut(s) 108, 585
HhaI GCGC 1 cut(s) 501
Hin1II CATG 7 cut(s) 151, 260, 325, 429, 561, 737, 803
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HinfI GANTC 1 cut(s) 122
HpaII CCGG 2 cut(s) 108, 585
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 353, 707
Hpy188I TCNGA 6 cut(s) 28, 59, 388, 495, 627, 717
Hpy188III TCNNGA 2 cut(s) 447, 579
Hpy8I GTNNAC 2 cut(s) 353, 707
HpyAV CCTTC 3 cut(s) 136, 385, 393
HpyCH4III ACNGT 5 cut(s) 35, 154, 704, 711, 744
HpyCH4IV ACGT 3 cut(s) 472, 604, 833
HpyCH4V TGCA 4 cut(s) 197, 429, 539, 561
HpyF10VI GCNNNNNNNGC 2 cut(s) 545, 669
HpyF3I CTNAG 3 cut(s) 56, 63, 294
HpySE526I ACGT 3 cut(s) 472, 604, 833
Hsp92II CATG 7 cut(s) 151, 260, 325, 429, 561, 737, 803
HspAI GCGC 1 cut(s) 499
KspI CCGCGG 1 cut(s) 549
Kzo9I GATC 3 cut(s) 79, 102, 182
LmnI GCTCC 3 cut(s) 486, 618, 691
Lsp1109I GCAGC 2 cut(s) 428, 782
LweI GCATC 1 cut(s) 206
MaeI CTAG 2 cut(s) 396, 402
MaeII ACGT 3 cut(s) 472, 604, 833
MaeIII GTNAC 3 cut(s) 143, 280, 803
MalI GATC 3 cut(s) 81, 104, 184
MbiI CCGCTC 2 cut(s) 478, 610
MboI GATC 3 cut(s) 79, 102, 182
MboII GAAGA 1 cut(s) 480
MhlI GDGCHC 2 cut(s) 688, 824
MluCI AATT 3 cut(s) 130, 442, 574
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 138
Mph1103I ATGCAT 2 cut(s) 431, 563
MseI TTAA 3 cut(s) 251, 422, 554
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 2 cut(s) 108, 585
MspR9I CCNGG 4 cut(s) 108, 377, 453, 585
Mva1269I GAATGC 2 cut(s) 489, 621
MvaI CCWGG 2 cut(s) 377, 453
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 2 cut(s) 545, 669
NciI CCSGG 2 cut(s) 108, 585
NcoI CCATGG 1 cut(s) 799
NdeII GATC 3 cut(s) 79, 102, 182
NlaIII CATG 7 cut(s) 151, 260, 325, 429, 561, 737, 803
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 2 cut(s) 143, 803
NsiI ATGCAT 2 cut(s) 431, 563
NspI RCATGY 2 cut(s) 429, 561
PctI GAATGC 2 cut(s) 489, 621
PkrI GCNGC 5 cut(s) 171, 319, 418, 550, 797
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 2 cut(s) 375, 451
PspEI GGTNACC 1 cut(s) 280
PspGI CCWGG 2 cut(s) 375, 451
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 380
PspPPI RGGWCCY 1 cut(s) 380
RsaI GTAC 2 cut(s) 354, 400
RsaNI GTAC 2 cut(s) 353, 399
RseI CAYNNNNRTG 1 cut(s) 152
SacI GAGCTC 1 cut(s) 688
SacII CCGCGG 1 cut(s) 549
SaqAI TTAA 3 cut(s) 251, 422, 554
SatI GCNGC 5 cut(s) 170, 318, 417, 549, 796
Sau3AI GATC 3 cut(s) 79, 102, 182
Sau96I GGNCC 1 cut(s) 380
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 4 cut(s) 108, 377, 453, 585
SduI GDGCHC 2 cut(s) 688, 824
SfaNI GCATC 1 cut(s) 206
Sfr303I CCGCGG 1 cut(s) 549
SgrBI CCGCGG 1 cut(s) 549
SinI GGWCC 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 113, 811
SmoI CTYRAG 2 cut(s) 113, 811
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 3 cut(s) 130, 442, 574
SspMI CTAG 2 cut(s) 396, 402
SstI GAGCTC 1 cut(s) 688
StyD4I CCNGG 4 cut(s) 106, 375, 451, 583
StyI CCWWGG 2 cut(s) 204, 799
TaaI ACNGT 5 cut(s) 35, 154, 704, 711, 744
TaiI ACGT 3 cut(s) 475, 607, 836
TaqI TCGA 1 cut(s) 407
TasI AATT 3 cut(s) 130, 442, 574
TatI WGTACW 2 cut(s) 352, 398
TauI GCSGC 3 cut(s) 172, 320, 551
Tru1I TTAA 3 cut(s) 251, 422, 554
Tru9I TTAA 3 cut(s) 251, 422, 554
TscAI CASTG 7 cut(s) 159, 538, 670, 716, 749, 794, 824
TseFI GTSAC 2 cut(s) 143, 803
TseI GCWGC 2 cut(s) 416, 795
Tsp45I GTSAC 2 cut(s) 143, 803
TspDTI ATGAA 2 cut(s) 273, 338
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 7 cut(s) 159, 538, 670, 716, 749, 794, 824
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 2 cut(s) 442, 574
XceI RCATGY 2 cut(s) 429, 561
XspI CTAG 2 cut(s) 396, 402
ZrmI AGTACT 1 cut(s) 400
Zsp2I ATGCAT 2 cut(s) 431, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.