Rh3BG373300
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004851
Physical Location & Seq
Reverse (-)
47131248 .. 47136492
5245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG373300.1

Sequence Viewer

Length: 693 bp
ATGGAGCAAGTCAAACAACCCGGAGCTAAGACCTATGCCATCGATCCGGCTATGGCTGAAAGTTTGATCACCCGACTTGAGACTGAGTTATTGCATTTGAGGCAGGGTGACATGACGGTGTTGGAATATGGGCGACGTTTCAATAGCTTGTATCGTTTTACGCCTGCCTTGATGGCTAATGAGAGGGATAAAATCCACAAATTCCTACAAGGACTACGCGATCAACTCCGTGTTATGTTAGCGGCTACCTTATTTACCGAGTTCAGTCAAGTATTTTTGGCCGCCATGAAGTGCGAGGACAGACTTTTGAAATGTGTACAACCATTAGAGGCGGGTTCCCCTAGCCTGAGTCCATCTGAGAGGGCTACCGCTATTTTGAGGTCCGAGGCTTTGACCGGTAGTAGACCTGACAGTTTTGGGTCTGACTCACGACAGAATTACAGAAGACGTGAACGGAGGCGGGGCAAGCACAAGCCACGAACCAAACAGTCCAGGAGTAGTGTTAGCGGTTATAGTAGAGGTTCTAGAAGACTTCCCATTCAGAGAGACCGTCCACAATGTCAGACGTGTGGCAAACACCATGATGGACAGTGCCAAGTAGGGAGTGTGGTATGTTTTCATTGTGGCCAACATGGTCACTACTTGAGGAAGTGCCCTCAACTGGCTCAGGGAGCTACTTCAGTGCCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2

Protein Analysis

230

Amino Acids

26.06

Weight (kDa)

10.0

Isoelectric Point (pI)

64.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 24 - 74 5.8e-09 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 403
AccII CGCG 1 cut(s) 219
AciI CCGC 6 cut(s) 242, 282, 332, 369, 460, 507
AclWI GGATC 1 cut(s) 38
AcoI YGGCCR 2 cut(s) 279, 625
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 661
AflIII ACRYGT 1 cut(s) 566
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 142, 310
AjiI CACGTC 2 cut(s) 449, 567
AjnI CCWGG 1 cut(s) 491
AluBI AGCT 3 cut(s) 26, 147, 674
AluI AGCT 3 cut(s) 26, 147, 674
Alw26I GTCTC 2 cut(s) 74, 540
AlwI GGATC 1 cut(s) 38
AoxI GGCC 2 cut(s) 279, 625
ApoI RAATTY 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 61, 119
AvaII GGWCC 1 cut(s) 381
BaeGI GKGCMC 2 cut(s) 656, 687
BalI TGGCCA 1 cut(s) 627
BbsI GAAGAC 2 cut(s) 451, 535
BccI CCATC 4 cut(s) 47, 166, 361, 578
BciT130I CCWGG 1 cut(s) 493
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 2 cut(s) 74, 540
BfaI CTAG 2 cut(s) 342, 525
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 2 cut(s) 243, 282
BlsI GCNGC 2 cut(s) 244, 283
Bme1390I CCNGG 2 cut(s) 21, 493
Bme18I GGWCC 1 cut(s) 381
BmgBI CACGTC 2 cut(s) 449, 567
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 2 cut(s) 21, 493
BpiI GAAGAC 2 cut(s) 451, 535
Bpu10I CCTNAGC 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 98, 664
BpuMI CCSGG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 661
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 666
BseBI CCWGG 1 cut(s) 493
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 661
BseMII CTCAG 4 cut(s) 75, 338, 348, 680
BseNI ACTGG 1 cut(s) 666
BseSI GKGCMC 2 cut(s) 656, 687
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 281, 627
BshTI ACCGGT 1 cut(s) 395
BshVI ATCGAT 1 cut(s) 42
BsiSI CCGG 3 cut(s) 21, 47, 396
BslI CCNNNNNNNGG 1 cut(s) 661
BsmAI GTCTC 2 cut(s) 74, 540
BsnI GGCC 2 cut(s) 281, 627
Bso31I GGTCTC 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 656, 687
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 3 cut(s) 43, 66, 220
BspACI CCGC 6 cut(s) 242, 282, 332, 369, 460, 507
BspANI GGCC 2 cut(s) 281, 627
BspCNI CTCAG 4 cut(s) 76, 339, 349, 679
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 337
BspPI GGATC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 540
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 1 cut(s) 666
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 3 cut(s) 43, 66, 220
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 5 cut(s) 118, 413, 489, 551, 591
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 165, 467
BstDEI CTNAG 5 cut(s) 27, 84, 347, 357, 666
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 3 cut(s) 46, 69, 223
BstMAI GTCTC 2 cut(s) 74, 540
BstMBI GATC 3 cut(s) 43, 66, 220
BstMWI GCNNNNNNNGC 4 cut(s) 100, 173, 466, 671
BstNI CCWGG 1 cut(s) 493
BstSCI CCNGG 2 cut(s) 19, 491
BstSLI GKGCMC 2 cut(s) 656, 687
BstUI CGCG 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 451, 535
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 2 cut(s) 281, 627
BsuTUI ATCGAT 1 cut(s) 42
BtrI CACGTC 2 cut(s) 449, 567
BtsIMutI CAGTG 2 cut(s) 596, 687
Cac8I GCNNGC 2 cut(s) 165, 467
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 381
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 317
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 4 cut(s) 112, 286, 581, 632
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 5 cut(s) 27, 84, 347, 357, 666
DpnI GATC 3 cut(s) 45, 68, 222
DpnII GATC 3 cut(s) 43, 66, 220
EaeI YGGCCR 2 cut(s) 279, 625
Eco31I GGTCTC 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 491
FaeI CATG 4 cut(s) 115, 289, 584, 635
FatI CATG 4 cut(s) 111, 285, 580, 631
FauI CCCGC 2 cut(s) 325, 453
FbaI TGATCA 1 cut(s) 66
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 243, 282
Fsp4HI GCNGC 2 cut(s) 243, 282
FspBI CTAG 2 cut(s) 342, 525
GluI GCNGC 2 cut(s) 243, 282
HaeIII GGCC 2 cut(s) 281, 627
HapII CCGG 3 cut(s) 21, 47, 396
Hin1II CATG 4 cut(s) 115, 289, 584, 635
HinfI GANTC 2 cut(s) 349, 425
HpaII CCGG 3 cut(s) 21, 47, 396
HphI GGTGA 2 cut(s) 61, 119
Hpy166II GTNNAC 4 cut(s) 317, 404, 452, 554
Hpy188I TCNGA 6 cut(s) 358, 385, 424, 543, 564, 692
Hpy188III TCNNGA 2 cut(s) 429, 525
Hpy8I GTNNAC 4 cut(s) 317, 404, 452, 554
Hpy99I CGWCG 1 cut(s) 138
HpyCH4III ACNGT 5 cut(s) 118, 413, 489, 551, 591
HpyCH4IV ACGT 3 cut(s) 136, 448, 566
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 173, 466, 671
HpyF3I CTNAG 5 cut(s) 27, 84, 347, 357, 666
HpySE526I ACGT 3 cut(s) 136, 448, 566
Hsp92II CATG 4 cut(s) 115, 289, 584, 635
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 3 cut(s) 43, 66, 220
LmnI GCTCC 3 cut(s) 4, 23, 671
MaeI CTAG 2 cut(s) 342, 525
MaeII ACGT 3 cut(s) 136, 448, 566
MaeIII GTNAC 2 cut(s) 107, 635
MalI GATC 3 cut(s) 45, 68, 222
MboI GATC 3 cut(s) 43, 66, 220
MboII GAAGA 2 cut(s) 456, 540
MhlI GDGCHC 2 cut(s) 656, 687
MlsI TGGCCA 1 cut(s) 627
MluCI AATT 2 cut(s) 200, 436
MluNI TGGCCA 1 cut(s) 627
MlyI GAGTC 2 cut(s) 358, 419
MmeI TCCRAC 1 cut(s) 102
Mox20I TGGCCA 1 cut(s) 627
MscI TGGCCA 1 cut(s) 627
MslI CAYNNNNRTG 2 cut(s) 116, 582
Msp20I TGGCCA 1 cut(s) 627
MspI CCGG 3 cut(s) 21, 47, 396
MspR9I CCNGG 2 cut(s) 21, 493
MvaI CCWGG 1 cut(s) 493
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 4 cut(s) 100, 173, 466, 671
NciI CCSGG 1 cut(s) 21
NdeII GATC 3 cut(s) 43, 66, 220
NlaIII CATG 4 cut(s) 115, 289, 584, 635
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 2 cut(s) 107, 635
PfoI TCCNGGA 1 cut(s) 491
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 2 cut(s) 244, 283
PleI GAGTC 2 cut(s) 357, 419
PpsI GAGTC 2 cut(s) 357, 419
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 381
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 2 cut(s) 116, 582
SatI GCNGC 2 cut(s) 243, 282
Sau3AI GATC 3 cut(s) 43, 66, 220
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 2 cut(s) 358, 419
ScrFI CCNGG 2 cut(s) 21, 493
SduI GDGCHC 2 cut(s) 656, 687
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 2 cut(s) 116, 582
SmlI CTYRAG 2 cut(s) 77, 643
SmoI CTYRAG 2 cut(s) 77, 643
Sse9I AATT 2 cut(s) 200, 436
SsiI CCGC 6 cut(s) 242, 282, 332, 369, 460, 507
SspMI CTAG 2 cut(s) 342, 525
StyD4I CCNGG 2 cut(s) 19, 491
TaaI ACNGT 5 cut(s) 118, 413, 489, 551, 591
TaiI ACGT 3 cut(s) 139, 451, 569
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 200, 436
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 245, 284
TscAI CASTG 2 cut(s) 596, 687
TseFI GTSAC 2 cut(s) 107, 635
Tsp45I GTSAC 2 cut(s) 107, 635
TspDTI ATGAA 2 cut(s) 302, 608
TspGWI ACGGA 2 cut(s) 218, 469
TspRI CASTG 2 cut(s) 596, 687
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 1 cut(s) 200
XbaI TCTAGA 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 403
XspI CTAG 2 cut(s) 342, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.