Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004851

Physical Location & Seq

Genomic Coordinates Forward (+)

20532852 .. 20534321

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGACCAATATGTGTTCACTGCAGATTGAAACGTACGGATCCATAGGAGACATCCAGCTGCACGCACTAGTTGTTGATGCCAATGAGGAACATGAAGCACTGCTCAAACAGGAGCCTCAAGTGGAGAGAATGTTGTGGAGCACTGTGAAGTCCTTCCTTGATCCCAAGACAACTGAAAAGATTAATGTCCTTGGTGACAAGAGTAAGTTACTTCAAATAATTGATGCTAGATCGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

79

Amino Acids

8.93

Weight (kDa)

4.97

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	34 - 78	2.8e-06	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43341 FvH4_3g43342
rosa_chinensis	RchiOBHm_Chr3g0497221
rosa_laevigata	RLG00000022469
rosa_multiflora	Rmu_sc0000869.1_g000018
rosa_roxburghii	Rroxscaffold_4G00331510 Rroxscaffold_6G00388250 Rroxscaffold_6G00421640
rosa_rugosa	Rorug01G0131600.1 Rorug03G0292000 Rorug04G0439100 Rorug07G0306600
rosa_samantha	Rh1AG309600 Rh1BG121000 Rh1BG422000 Rh1CG290300 Rh1DG454700 Rh2AG238100 Rh2CG303800 Rh2CG398500 Rh2DG245600 Rh2DG339900 Rh3BG373300 Rh3CG152000 Rh3DG153000 Rh4BG233100 Rh6DG139100 Rh6DG164400 Rh7AG422700
rosa_wichuraiana	Rw1G027500 Rw3G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	33, 46, 155
AfaI	GTAC	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	29, 215
AhlI	ACTAGT	1 cut(s)	67
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	3 cut(s)	33, 46, 155
ApeKI	GCWGC	1 cut(s)	58
AseI	ATTAAT	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	42
BcuI	ACTAGT	1 cut(s)	67
BfaI	CTAG	2 cut(s)	68, 228
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	40, 114
BmsI	GCATC	2 cut(s)	67, 214
BpuEI	CTTGAG	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	143
BsiWI	CGTACG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	38, 160, 230
BspLI	GGNNCC	2 cut(s)	40, 114
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	3 cut(s)	33, 46, 155
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	38, 160, 230
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	3 cut(s)	41, 163, 233
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	38, 160, 230
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	51
BtsI	GCAGTG	2 cut(s)	17, 98
BtsIMutI	CAGTG	3 cut(s)	17, 98, 141
Cac8I	GCNNGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	2 cut(s)	58, 115
CviKI_1	RGCY	2 cut(s)	58, 115
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	3 cut(s)	40, 162, 232
DpnII	GATC	3 cut(s)	38, 160, 230
Eco130I	CCWWGG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	95
FaiI	YATR	4 cut(s)	11, 44, 93, 238
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	68, 228
GluI	GCNGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	22, 61
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	3 cut(s)	38, 160, 230
LmnI	GCTCC	2 cut(s)	112, 138
LpnPI	CCDG	2 cut(s)	68, 95
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	2 cut(s)	67, 214
MaeI	CTAG	2 cut(s)	68, 228
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	194, 207
MalI	GATC	3 cut(s)	40, 162, 232
MboI	GATC	3 cut(s)	38, 160, 230
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	219
MnlI	CCTC	2 cut(s)	79, 126
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	58
NdeII	GATC	3 cut(s)	38, 160, 230
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	2 cut(s)	40, 114
NmuCI	GTSAC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	152
Pfl23II	CGTACG	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	183
PspLI	CGTACG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	40, 114
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	3 cut(s)	38, 160, 230
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	2 cut(s)	35, 60
SfaNI	GCATC	2 cut(s)	67, 214
SfcI	CTRYAG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
SpeI	ACTAGT	1 cut(s)	67
Sse9I	AATT	1 cut(s)	219
SspMI	CTAG	2 cut(s)	68, 228
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	35
TasI	AATT	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	3 cut(s)	24, 105, 148
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	3 cut(s)	24, 105, 148
VspI	ATTAAT	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	2 cut(s)	68, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.