Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004851

Physical Location & Seq

Genomic Coordinates Reverse (-)

43979153 .. 43982395

Gene Structure 3243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG339900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTAGATTACATGCTGCAATTGATATCTTTTGTTGCCAATTGAGGACTTTGGGGCGAGTATCTGTTGCAATTGGTATCTCAGGTTCTCTATATATCATCACCATCTCAGGCCGAGTATCTGTAGCCAATAGGGAATCAGATTTAATTGTTTGGGAATCTACTTTGCTGCATAATGAGATCCGTGAGTACCATAGGAGACATCCAGCTGCACTAGTTGTTGATGCCAATGAGGAACATGAAGCACTGTTCAAAGAAGAGCCTCAAGTTGAGTTCAGTGGAGAGGTTGTAGCTGTACTTGTTACAAAAGAAACTGCTGACAGGATCTCTGTACTGCTGACTAATTTGTCAGAACCAAAGAAACTCAAAAGAATTAGTGGTTTTGACATGCCACCTCCTGCTTCTGCACTATTACCTGGTGCTGCTGTTCCTGGGACAGATAGTAAGAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

151

Amino Acids

16.58

Weight (kDa)

6.52

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43341 FvH4_3g43342
rosa_chinensis	RchiOBHm_Chr3g0497221
rosa_laevigata	RLG00000022469
rosa_multiflora	Rmu_sc0000869.1_g000018
rosa_roxburghii	Rroxscaffold_4G00331510 Rroxscaffold_6G00388250 Rroxscaffold_6G00421640
rosa_rugosa	Rorug01G0131600.1 Rorug03G0292000 Rorug04G0439100 Rorug07G0306600
rosa_samantha	Rh1AG309600 Rh1BG121000 Rh1BG422000 Rh1CG290300 Rh1DG454700 Rh2AG238100 Rh2CG303800 Rh2CG398500 Rh2DG245600 Rh2DG339900 Rh3BG373300 Rh3CG152000 Rh3DG153000 Rh4BG233100 Rh6DG139100 Rh6DG164400 Rh7AG422700
rosa_wichuraiana	Rw1G027500 Rw3G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AclWI	GGATC	2 cut(s)	175, 332
AfaI	GTAC	3 cut(s)	191, 297, 333
AgsI	TTSAA	1 cut(s)	253
AhlI	ACTAGT	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	415, 430
AluBI	AGCT	2 cut(s)	209, 293
AluI	AGCT	2 cut(s)	209, 293
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	175, 332
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	4 cut(s)	17, 169, 209, 422
AsuHPI	GGTGA	1 cut(s)	94
BbvI	GCAGC	4 cut(s)	4, 156, 196, 409
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	417, 432
BcoDI	GTCTC	1 cut(s)	193
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	2 cut(s)	6, 215
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	4 cut(s)	18, 170, 210, 423
BlsI	GCNGC	4 cut(s)	19, 171, 211, 424
Bme1390I	CCNGG	2 cut(s)	417, 432
BmrFI	CCNGG	2 cut(s)	417, 432
BmsI	GCATC	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
BseBI	CCWGG	2 cut(s)	417, 432
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	96, 123
BseXI	GCAGC	4 cut(s)	4, 156, 196, 409
BsgI	GTGCAG	2 cut(s)	195, 390
BshFI	GGCC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	448
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	180, 324
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	95, 122
BspPI	GGATC	2 cut(s)	175, 332
BspQI	GCTCTTC	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	2 cut(s)	180, 324
Bst2UI	CCWGG	2 cut(s)	417, 432
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	82, 109
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	2 cut(s)	183, 327
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	180, 324
BstNI	CCWGG	2 cut(s)	417, 432
BstNSI	RCATGY	2 cut(s)	17, 391
BstSCI	CCNGG	2 cut(s)	415, 430
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	4, 156, 196, 409
BstX2I	RGATCY	2 cut(s)	180, 324
BstYI	RGATCY	2 cut(s)	180, 324
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	245, 283
CsiI	ACCWGGT	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	190, 296, 332
CviAII	CATG	3 cut(s)	14, 239, 388
CviJI	RGCY	6 cut(s)	5, 114, 128, 209, 262, 293
CviKI_1	RGCY	6 cut(s)	5, 114, 128, 209, 262, 293
CviQI	GTAC	3 cut(s)	190, 296, 332
DdeI	CTNAG	2 cut(s)	82, 109
DpnI	GATC	2 cut(s)	182, 326
DpnII	GATC	2 cut(s)	180, 324
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	415, 430
EcoRV	GATATC	1 cut(s)	28
FaeI	CATG	3 cut(s)	17, 242, 391
FaiI	YATR	7 cut(s)	15, 94, 96, 174, 195, 240, 389
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	3 cut(s)	13, 238, 387
Fnu4HI	GCNGC	4 cut(s)	18, 170, 210, 423
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	18, 170, 210, 423
FspBI	CTAG	2 cut(s)	6, 215
GluI	GCNGC	4 cut(s)	18, 170, 210, 423
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	17, 242, 391
HinfI	GANTC	2 cut(s)	137, 158
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	142, 352
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	20, 71, 172, 212, 407
HpyF3I	CTNAG	2 cut(s)	82, 109
Hsp92II	CATG	3 cut(s)	17, 242, 391
Kzo9I	GATC	2 cut(s)	180, 324
LguI	GCTCTTC	1 cut(s)	252
LpnPI	CCDG	9 cut(s)	69, 96, 219, 307, 402, 411, 417, 429, 444
Lsp1109I	GCAGC	4 cut(s)	4, 156, 196, 409
LweI	GCATC	1 cut(s)	214
MabI	ACCWGGT	1 cut(s)	415
MaeI	CTAG	2 cut(s)	6, 215
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	182, 326
MboI	GATC	2 cut(s)	180, 324
MboII	GAAGA	1 cut(s)	269
MfeI	CAATTG	3 cut(s)	21, 41, 72
MflI	RGATCY	2 cut(s)	180, 324
MluCI	AATT	6 cut(s)	21, 41, 72, 147, 343, 372
MnlI	CCTC	5 cut(s)	39, 226, 273, 277, 405
MseI	TTAA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	417, 432
MunI	CAATTG	3 cut(s)	21, 41, 72
MvaI	CCWGG	2 cut(s)	417, 432
NdeII	GATC	2 cut(s)	180, 324
NlaIII	CATG	3 cut(s)	17, 242, 391
NmeAIII	GCCGAG	1 cut(s)	140
NspI	RCATGY	2 cut(s)	17, 391
PciSI	GCTCTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	137, 158
PkrI	GCNGC	4 cut(s)	19, 171, 211, 424
Psp6I	CCWGG	2 cut(s)	415, 430
PspGI	CCWGG	2 cut(s)	415, 430
PsrI	GAACNNNNNNTAC	2 cut(s)	70, 102
PsuI	RGATCY	2 cut(s)	180, 324
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	3 cut(s)	191, 297, 333
RsaNI	GTAC	3 cut(s)	190, 296, 332
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	4 cut(s)	18, 170, 210, 423
Sau3AI	GATC	2 cut(s)	180, 324
ScrFI	CCNGG	2 cut(s)	417, 432
SetI	ASST	7 cut(s)	88, 211, 288, 295, 397, 418, 455
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SpeI	ACTAGT	1 cut(s)	214
Sse9I	AATT	6 cut(s)	21, 41, 72, 147, 343, 372
SspMI	CTAG	2 cut(s)	6, 215
StyD4I	CCNGG	2 cut(s)	415, 430
TaaI	ACNGT	1 cut(s)	249
TasI	AATT	6 cut(s)	21, 41, 72, 147, 343, 372
TatI	WGTACW	2 cut(s)	295, 331
TfiI	GAWTC	2 cut(s)	137, 158
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	2 cut(s)	252, 283
TseI	GCWGC	4 cut(s)	17, 169, 209, 422
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	252, 283
XceI	RCATGY	2 cut(s)	17, 391
XspI	CTAG	2 cut(s)	6, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.