Rmu_sc0000869.1_g000018

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000869.1
OG0004851
Physical Location & Seq
Forward (+)
98678 .. 99695
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000869.1_g000018.1.cds

Sequence Viewer

Length: 351 bp
atgttgtggagcactgtgaagtccttccttgatcccaagacaactgaaaagattaatgtcagtataccttttgagctaaaagttatagttcttgtcaggaccatattattaactagtgcaagtttattcctccaggtccttagtgacaagagcaagttacttcaaataattgatgctagatggcttttcttggcctgtcaccctcgcttgtggctgcgagttgaacgatccattaaagatccattggagcctggcgtcttccccagcattgagacagcggttgctgccgcaaggcttggcgacaccattctaatttcagcagggggaaagcatcttgcttctgatacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

116

Amino Acids

12.88

Weight (kDa)

9.3

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 64
AciI CCGC 2 cut(s) 278, 288
AclWI GGATC 3 cut(s) 26, 222, 233
AcyI GRCGYC 1 cut(s) 255
AgsI TTSAA 2 cut(s) 164, 224
AhlI ACTAGT 1 cut(s) 113
AjnI CCWGG 2 cut(s) 132, 250
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 3 cut(s) 26, 222, 233
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 214, 284
AseI ATTAAT 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 99, 136
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 2 cut(s) 99, 136
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 201, 271
BccI CCATC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 134, 252
BcoDI GTCTC 1 cut(s) 266
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 2 cut(s) 114, 177
BisI GCNGC 3 cut(s) 215, 285, 288
BlsI GCNGC 3 cut(s) 216, 286, 289
Bme1390I CCNGG 2 cut(s) 134, 252
Bme18I GGWCC 2 cut(s) 99, 136
BmgT120I GGNCC 2 cut(s) 99, 136
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 134, 252
BmsI GCATC 2 cut(s) 163, 340
BpiI GAAGAC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 255
BseBI CCWGG 2 cut(s) 134, 252
BseXI GCAGC 2 cut(s) 201, 271
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 266
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 31, 227, 238
BspACI CCGC 2 cut(s) 278, 288
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 3 cut(s) 26, 222, 233
BssMI GATC 3 cut(s) 31, 227, 238
BssNAI GTATAC 1 cut(s) 65
BssNI GRCGYC 1 cut(s) 255
Bst1107I GTATAC 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 134, 252
Bst4CI ACNGT 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 140
BstKTI GATC 3 cut(s) 34, 230, 241
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 31, 227, 238
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 2 cut(s) 134, 252
BstSCI CCNGG 2 cut(s) 132, 250
BstV1I GCAGC 2 cut(s) 201, 271
BstV2I GAAGAC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BstZ17I GTATAC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 99, 136
CseI GACGC 1 cut(s) 244
CviJI RGCY 6 cut(s) 76, 184, 194, 214, 250, 295
CviKI_1 RGCY 6 cut(s) 76, 184, 194, 214, 250, 295
DdeI CTNAG 1 cut(s) 140
DpnI GATC 3 cut(s) 33, 229, 240
DpnII GATC 3 cut(s) 31, 227, 238
Eco47I GGWCC 2 cut(s) 99, 136
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 132, 250
FaiI YATR 3 cut(s) 65, 86, 104
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 215, 285, 288
Fsp4HI GCNGC 3 cut(s) 215, 285, 288
FspBI CTAG 2 cut(s) 114, 177
GluI GCNGC 3 cut(s) 215, 285, 288
GsaI CCCAGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 194
HgaI GACGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 255
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 255
Kzo9I GATC 3 cut(s) 31, 227, 238
LmnI GCTCC 2 cut(s) 9, 247
LpnPI CCDG 8 cut(s) 82, 119, 146, 208, 237, 264, 277, 306
Lsp1109I GCAGC 2 cut(s) 201, 271
LweI GCATC 2 cut(s) 163, 340
MaeI CTAG 2 cut(s) 114, 177
MaeIII GTNAC 3 cut(s) 143, 156, 197
MalI GATC 3 cut(s) 33, 229, 240
MboI GATC 3 cut(s) 31, 227, 238
MboII GAAGA 1 cut(s) 250
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 2 cut(s) 168, 312
MnlI CCTC 2 cut(s) 140, 213
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 4 cut(s) 54, 110, 234, 349
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 2 cut(s) 134, 252
MvaI CCWGG 2 cut(s) 134, 252
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 3 cut(s) 31, 227, 238
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 143, 197
PdmI GAANNNNTTC 1 cut(s) 23
PkrI GCNGC 3 cut(s) 216, 286, 289
PpuMI RGGWCCY 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 132, 250
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 2 cut(s) 132, 250
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 99, 136
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 1 cut(s) 238
SaqAI TTAA 4 cut(s) 54, 110, 234, 349
SatI GCNGC 3 cut(s) 215, 285, 288
Sau3AI GATC 3 cut(s) 31, 227, 238
Sau96I GGNCC 2 cut(s) 99, 136
ScrFI CCNGG 2 cut(s) 134, 252
SduI GDGCHC 1 cut(s) 14
SetI ASST 3 cut(s) 70, 78, 138
SfaNI GCATC 2 cut(s) 163, 340
SinI GGWCC 2 cut(s) 99, 136
SpeI ACTAGT 1 cut(s) 113
Sse9I AATT 2 cut(s) 168, 312
SsiI CCGC 2 cut(s) 278, 288
SspMI CTAG 2 cut(s) 114, 177
StyD4I CCNGG 2 cut(s) 132, 250
TaaI ACNGT 1 cut(s) 16
TasI AATT 2 cut(s) 168, 312
TauI GCSGC 1 cut(s) 290
Tru1I TTAA 4 cut(s) 54, 110, 234, 349
Tru9I TTAA 4 cut(s) 54, 110, 234, 349
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 143, 197
TseI GCWGC 2 cut(s) 214, 284
Tsp45I GTSAC 2 cut(s) 143, 197
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 99, 136
VspI ATTAAT 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 2 cut(s) 114, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.