Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004851

Physical Location & Seq

Genomic Coordinates Forward (+)

30810106 .. 30812205

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0306600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACGACAAGTTTTACTTCCTCCGTCGCGCTTGCAGGTGATAAAGTGGTGGATATCACCAAGTTGACAATAGGACCTGTGAAGCGCTCCTCTAAGGCATTTCTGCAAGGGAGGTTCTTGACCACCAAGATAGTAGATGTTAGGGAGGTGAAAAAAACTGTTGTGAATATTGCTTCAGGGAAATATCTTGATATGGATGAGAAGCTTTTTAATTACAAGAAGGAAATTAAGCGGATCCCGATCTATTACTGCGCTGATGCTTATGGAATTGACGGCAACATAGTGATCAAGGAGCAATGCATAGATAGTGGCTTTGATGGAGGTGTAGGCAGCAGGGTTTTCAGGTGGAAGGTTTCACTGAGGGCTCCGGATGGCGGCGTTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

128

Amino Acids

14.12

Weight (kDa)

9.49

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43341 FvH4_3g43342
rosa_chinensis	RchiOBHm_Chr3g0497221
rosa_laevigata	RLG00000022469
rosa_multiflora	Rmu_sc0000869.1_g000018
rosa_roxburghii	Rroxscaffold_4G00331510 Rroxscaffold_6G00388250 Rroxscaffold_6G00421640
rosa_rugosa	Rorug01G0131600.1 Rorug03G0292000 Rorug04G0439100 Rorug07G0306600
rosa_samantha	Rh1AG309600 Rh1BG121000 Rh1BG422000 Rh1CG290300 Rh1DG454700 Rh2AG238100 Rh2CG303800 Rh2CG398500 Rh2DG245600 Rh2DG339900 Rh3BG373300 Rh3CG152000 Rh3DG153000 Rh4BG233100 Rh6DG139100 Rh6DG164400 Rh7AG422700
rosa_wichuraiana	Rw1G027500 Rw3G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	26
AccII	CGCG	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	2 cut(s)	232, 375
AclWI	GGATC	2 cut(s)	229, 242
AcuI	CTGAAG	1 cut(s)	159
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	374
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
AlwI	GGATC	2 cut(s)	229, 242
Aor13HI	TCCGGA	1 cut(s)	367
Aor51HI	AGCGCT	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	330
AspLEI	GCGC	3 cut(s)	31, 87, 254
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	49, 50, 160
AvaII	GGWCC	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	2 cut(s)	311, 365
BceAI	ACGGC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	331, 376
BlsI	GCNGC	2 cut(s)	332, 377
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	236, 366
BmsI	GCATC	1 cut(s)	247
BsaAI	YACGTR	1 cut(s)	384
BsaBI	GATNNNNATC	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	239
BseAI	TCCGGA	1 cut(s)	367
BseGI	GGATG	2 cut(s)	202, 376
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	234, 240, 285
BspACI	CCGC	2 cut(s)	232, 375
BspCNI	CTCAG	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	236, 366
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	229, 242
BsrDI	GCAATG	1 cut(s)	302
BssMI	GATC	3 cut(s)	234, 240, 285
Bst4CI	ACNGT	1 cut(s)	160
BstBAI	YACGTR	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	93, 359
BstF5I	GGATG	2 cut(s)	202, 376
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	3 cut(s)	31, 87, 254
BstKTI	GATC	3 cut(s)	237, 243, 288
BstMBI	GATC	3 cut(s)	234, 240, 285
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	202, 376
BtsIMutI	CAGTG	1 cut(s)	356
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	3 cut(s)	31, 87, 254
Cfr13I	GGNCC	1 cut(s)	74
CviJI	RGCY	3 cut(s)	205, 312, 365
CviKI_1	RGCY	3 cut(s)	205, 312, 365
DdeI	CTNAG	2 cut(s)	93, 359
DpnI	GATC	3 cut(s)	236, 242, 287
DpnII	GATC	3 cut(s)	234, 240, 285
Eco24I	GRGCYC	1 cut(s)	367
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	74
Eco47III	AGCGCT	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRV	GATATC	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	367
FaiI	YATR	4 cut(s)	194, 264, 281, 302
FalI	AAGNNNNNCTT	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	331, 376
FokI	GGATG	2 cut(s)	209, 383
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	2 cut(s)	331, 376
GlaI	GCGC	3 cut(s)	30, 86, 253
GluI	GCNGC	2 cut(s)	331, 376
HaeII	RGCGCY	1 cut(s)	88
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	3 cut(s)	31, 87, 254
Hin6I	GCGC	3 cut(s)	29, 85, 252
HinP1I	GCGC	3 cut(s)	29, 85, 252
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	203
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	3 cut(s)	49, 50, 160
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188III	TCNNGA	4 cut(s)	118, 188, 238, 368
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	214, 343
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	3 cut(s)	35, 106, 300
HpyF3I	CTNAG	2 cut(s)	93, 359
HpySE526I	ACGT	1 cut(s)	383
HspAI	GCGC	3 cut(s)	29, 85, 252
Kpn2I	TCCGGA	1 cut(s)	367
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	234, 240, 285
LmnI	GCTCC	3 cut(s)	92, 292, 370
LpnPI	CCDG	6 cut(s)	21, 90, 162, 319, 328, 381
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	247
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	3 cut(s)	236, 242, 287
MboI	GATC	3 cut(s)	234, 240, 285
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	3 cut(s)	211, 225, 267
MnlI	CCTC	6 cut(s)	31, 100, 105, 139, 314, 354
Mph1103I	ATGCAT	1 cut(s)	302
MroI	TCCGGA	1 cut(s)	367
MseI	TTAA	2 cut(s)	210, 228
MspI	CCGG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	29
NdeII	GATC	3 cut(s)	234, 240, 285
NlaIV	GGNNCC	2 cut(s)	236, 366
NsiI	ATGCAT	1 cut(s)	302
PaqCI	CACCTGC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	332, 377
Ppu21I	YACGTR	1 cut(s)	384
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	236, 366
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	210, 228
SatI	GCNGC	2 cut(s)	331, 376
Sau3AI	GATC	3 cut(s)	234, 240, 285
Sau96I	GGNCC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	9 cut(s)	40, 79, 116, 150, 207, 325, 347, 354, 386
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	3 cut(s)	211, 225, 267
SsiI	CCGC	2 cut(s)	232, 375
SspI	AATATT	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	386
TasI	AATT	3 cut(s)	211, 225, 267
TauI	GCSGC	1 cut(s)	378
Tru1I	TTAA	2 cut(s)	210, 228
Tru9I	TTAA	2 cut(s)	210, 228
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	1 cut(s)	330
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.