RchiOBHm_Chr3g0497221

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004851
Physical Location & Seq
Reverse (-)
48923966 .. 48929386
5421 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45943

Sequence Viewer

Length: 852 bp
ATGGAGCAAGTCAAACAACCCGGAGCTAAGACCTATGCCATCGATCCGGCTATGGCTGAAAGTTTGATCACCCGACTTGAGACTGAGTTTTTGCATTTGAGGCAGGGTGACATGACGGTGTTGGAATATGGGCGACGTTTCAATAGCTTGTATCGTTTTACGCCTGCCTTGATGGCTAATGAGAGGGATAAAATCCACAAATTCCTACAAGGACTACGCGATCAACTCCGTGTTATGTTAGCGGCTACCTTATTTACCGACTTCAGTCAAGTATTTTTGGCCGCCATGAAGTGCGAGGACAGACTTTTGAAATGTGTACAACCATTAGAGGCGGGTTCCCCTAGCCCGAGTCCATCTGAGAGGGCTACTGCTATTTTGAGGTCCGAGGCTTTGACCGGTAGTAGACCTGACAGTTTTGGGTCCGACTCACGACAGAATTACAGAAGACGTGAACGGAGGCGGGGCAAGCACAAGCCACGAACCAAACAGTCCAGGAGTAGTGTTAGCGGTTATAGTAGAGGTTCTACAAGACTTCCCATTCAGAGAGACCGTCCACAATGTCAGACGTGTGGCAAACACCATGATGGACAGTGCCAAGTAGGGAGTGTGGTATGTTTTCATTGTGGCCAACATGGTCACTACTTGAGGAAGTGCCCTCAACTGGCTCAGGGAGCTACTTCAGTGCCCATACTTCCCATTCAGAGAGACCGTCCACAATGTCAGACGTGTGGCAAACACCATGATGGACAGTGCCAAGTAGGGAGTGTGGTATGTTTTCATTGTGGCCAACATGGTCACTACTTGAGGAAGTGCCCTCAACTGGCTCAGGGAGCTACTTCAGTGCCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

283

Amino Acids

31.82

Weight (kDa)

9.67

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 24 - 74 9.4e-09 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 403
AccII CGCG 1 cut(s) 219
AciI CCGC 5 cut(s) 242, 282, 332, 460, 507
AclWI GGATC 1 cut(s) 38
AcoI YGGCCR 3 cut(s) 279, 625, 784
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 3 cut(s) 247, 663, 822
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 2 cut(s) 661, 820
AflIII ACRYGT 2 cut(s) 566, 725
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 142, 310
AjiI CACGTC 3 cut(s) 449, 567, 726
AjnI CCWGG 1 cut(s) 491
AluBI AGCT 4 cut(s) 26, 147, 674, 833
AluI AGCT 4 cut(s) 26, 147, 674, 833
Alw26I GTCTC 3 cut(s) 74, 540, 699
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 3 cut(s) 279, 625, 784
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AsiGI ACCGGT 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 381, 420
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 61, 119
AvaI CYCGRG 1 cut(s) 346
AvaII GGWCC 2 cut(s) 381, 420
BaeGI GKGCMC 4 cut(s) 656, 687, 815, 846
BalI TGGCCA 2 cut(s) 627, 786
BbsI GAAGAC 1 cut(s) 451
BccI CCATC 5 cut(s) 47, 166, 361, 578, 737
BciT130I CCWGG 1 cut(s) 493
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 3 cut(s) 74, 540, 699
BfaI CTAG 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 2 cut(s) 243, 282
BlsI GCNGC 2 cut(s) 244, 283
Bme1390I CCNGG 2 cut(s) 21, 493
Bme18I GGWCC 2 cut(s) 381, 420
BmeT110I CYCGRG 1 cut(s) 346
BmgBI CACGTC 3 cut(s) 449, 567, 726
BmgT120I GGNCC 2 cut(s) 381, 420
BmiI GGNNCC 2 cut(s) 337, 421
BmrFI CCNGG 2 cut(s) 21, 493
BoxI GACNNNNGTC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 451
Bpu10I CCTNAGC 2 cut(s) 666, 825
BpuEI CTTGAG 3 cut(s) 98, 664, 823
BpuMI CCSGG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 42
BsaI GGTCTC 2 cut(s) 540, 699
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 2 cut(s) 661, 820
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 2 cut(s) 666, 825
BseBI CCWGG 1 cut(s) 493
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 661, 820
BseMII CTCAG 4 cut(s) 75, 348, 680, 839
BseNI ACTGG 2 cut(s) 666, 825
BseSI GKGCMC 4 cut(s) 656, 687, 815, 846
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 281, 627, 786
BshTI ACCGGT 1 cut(s) 395
BshVI ATCGAT 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 3 cut(s) 21, 47, 396
BslI CCNNNNNNNGG 2 cut(s) 661, 820
BsmAI GTCTC 3 cut(s) 74, 540, 699
BsnI GGCC 3 cut(s) 281, 627, 786
Bso31I GGTCTC 2 cut(s) 540, 699
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 4 cut(s) 656, 687, 815, 846
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 3 cut(s) 43, 66, 220
BspACI CCGC 5 cut(s) 242, 282, 332, 460, 507
BspANI GGCC 3 cut(s) 281, 627, 786
BspCNI CTCAG 4 cut(s) 76, 349, 679, 838
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 337, 421
BspPI GGATC 1 cut(s) 38
BspTNI GGTCTC 2 cut(s) 540, 699
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 2 cut(s) 666, 825
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 3 cut(s) 43, 66, 220
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 7 cut(s) 118, 413, 489, 551, 591, 710, 750
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 165, 467
BstDEI CTNAG 5 cut(s) 27, 84, 357, 666, 825
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 3 cut(s) 46, 69, 223
BstMAI GTCTC 3 cut(s) 74, 540, 699
BstMBI GATC 3 cut(s) 43, 66, 220
BstMWI GCNNNNNNNGC 5 cut(s) 100, 173, 466, 671, 830
BstNI CCWGG 1 cut(s) 493
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 19, 491
BstSLI GKGCMC 4 cut(s) 656, 687, 815, 846
BstUI CGCG 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 451
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 3 cut(s) 281, 627, 786
BsuTUI ATCGAT 1 cut(s) 42
BtrI CACGTC 3 cut(s) 449, 567, 726
BtsIMutI CAGTG 4 cut(s) 596, 687, 755, 846
Cac8I GCNNGC 2 cut(s) 165, 467
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 2 cut(s) 381, 420
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 317
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 6 cut(s) 112, 286, 581, 632, 740, 791
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 5 cut(s) 27, 84, 357, 666, 825
DpnI GATC 3 cut(s) 45, 68, 222
DpnII GATC 3 cut(s) 43, 66, 220
EaeI YGGCCR 3 cut(s) 279, 625, 784
Eco31I GGTCTC 2 cut(s) 540, 699
Eco47I GGWCC 2 cut(s) 381, 420
Eco57I CTGAAG 3 cut(s) 247, 663, 822
Eco88I CYCGRG 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 491
FaeI CATG 6 cut(s) 115, 289, 584, 635, 743, 794
FatI CATG 6 cut(s) 111, 285, 580, 631, 739, 790
FauI CCCGC 2 cut(s) 325, 453
FbaI TGATCA 1 cut(s) 66
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 243, 282
Fsp4HI GCNGC 2 cut(s) 243, 282
FspBI CTAG 1 cut(s) 342
GluI GCNGC 2 cut(s) 243, 282
HaeIII GGCC 3 cut(s) 281, 627, 786
HapII CCGG 3 cut(s) 21, 47, 396
Hin1II CATG 6 cut(s) 115, 289, 584, 635, 743, 794
HinfI GANTC 2 cut(s) 349, 425
HpaII CCGG 3 cut(s) 21, 47, 396
HphI GGTGA 2 cut(s) 61, 119
Hpy166II GTNNAC 5 cut(s) 317, 404, 452, 554, 713
Hpy188I TCNGA 8 cut(s) 358, 385, 424, 543, 564, 702, 723, 851
Hpy188III TCNNGA 1 cut(s) 429
Hpy8I GTNNAC 5 cut(s) 317, 404, 452, 554, 713
Hpy99I CGWCG 1 cut(s) 138
HpyCH4III ACNGT 7 cut(s) 118, 413, 489, 551, 591, 710, 750
HpyCH4IV ACGT 4 cut(s) 136, 448, 566, 725
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 173, 466, 671, 830
HpyF3I CTNAG 5 cut(s) 27, 84, 357, 666, 825
HpySE526I ACGT 4 cut(s) 136, 448, 566, 725
Hsp92II CATG 6 cut(s) 115, 289, 584, 635, 743, 794
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 3 cut(s) 43, 66, 220
LmnI GCTCC 4 cut(s) 4, 23, 671, 830
MaeI CTAG 1 cut(s) 342
MaeII ACGT 4 cut(s) 136, 448, 566, 725
MaeIII GTNAC 3 cut(s) 107, 635, 794
MalI GATC 3 cut(s) 45, 68, 222
MboI GATC 3 cut(s) 43, 66, 220
MboII GAAGA 1 cut(s) 456
MhlI GDGCHC 4 cut(s) 656, 687, 815, 846
MlsI TGGCCA 2 cut(s) 627, 786
MluCI AATT 2 cut(s) 200, 436
MluNI TGGCCA 2 cut(s) 627, 786
MlyI GAGTC 2 cut(s) 358, 419
MmeI TCCRAC 2 cut(s) 102, 447
Mox20I TGGCCA 2 cut(s) 627, 786
MscI TGGCCA 2 cut(s) 627, 786
MslI CAYNNNNRTG 3 cut(s) 116, 582, 741
Msp20I TGGCCA 2 cut(s) 627, 786
MspI CCGG 3 cut(s) 21, 47, 396
MspR9I CCNGG 2 cut(s) 21, 493
MvaI CCWGG 1 cut(s) 493
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 5 cut(s) 100, 173, 466, 671, 830
NciI CCSGG 1 cut(s) 21
NdeII GATC 3 cut(s) 43, 66, 220
NlaIII CATG 6 cut(s) 115, 289, 584, 635, 743, 794
NlaIV GGNNCC 2 cut(s) 337, 421
NmuCI GTSAC 3 cut(s) 107, 635, 794
PfoI TCCNGGA 1 cut(s) 491
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 2 cut(s) 244, 283
PleI GAGTC 2 cut(s) 357, 419
PpsI GAGTC 2 cut(s) 357, 419
PshAI GACNNNNGTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 2 cut(s) 337, 421
PspPI GGNCC 2 cut(s) 381, 420
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 3 cut(s) 116, 582, 741
SatI GCNGC 2 cut(s) 243, 282
Sau3AI GATC 3 cut(s) 43, 66, 220
Sau96I GGNCC 2 cut(s) 381, 420
SchI GAGTC 2 cut(s) 358, 419
ScrFI CCNGG 2 cut(s) 21, 493
SduI GDGCHC 4 cut(s) 656, 687, 815, 846
SinI GGWCC 2 cut(s) 381, 420
SmiMI CAYNNNNRTG 3 cut(s) 116, 582, 741
SmlI CTYRAG 3 cut(s) 77, 643, 802
SmoI CTYRAG 3 cut(s) 77, 643, 802
Sse9I AATT 2 cut(s) 200, 436
SsiI CCGC 5 cut(s) 242, 282, 332, 460, 507
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 19, 491
TaaI ACNGT 7 cut(s) 118, 413, 489, 551, 591, 710, 750
TaiI ACGT 4 cut(s) 139, 451, 569, 728
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 200, 436
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 245, 284
TscAI CASTG 4 cut(s) 596, 687, 755, 846
TseFI GTSAC 3 cut(s) 107, 635, 794
Tsp45I GTSAC 3 cut(s) 107, 635, 794
TspDTI ATGAA 3 cut(s) 302, 608, 767
TspGWI ACGGA 2 cut(s) 218, 469
TspRI CASTG 4 cut(s) 596, 687, 755, 846
VpaK11BI GGWCC 2 cut(s) 381, 420
XapI RAATTY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 403
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.