Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004851

Physical Location & Seq

Genomic Coordinates Forward (+)

59610995 .. 59611654

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0439100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAGAGAGAACTCTTCCTTTCTCCATTTATTCCTCAGCTTTGCTCTTCTACTGGGCCAAGCCAAACCCGACCCAGATCCACTTCAAGACTACTGCATAGCAGATACTAAAACCCCTCAGTATTTTTACTTCAACGGTGCACCCTGCATTAATCCAAAGCTAGCAGTCTCCTCCCATTTCACTACATCAGTCCTATCCAAACCCGGAAACACTAAAGCCAACCCTTTCGGCTTCAATGTAACTCTAACCAACGCGGTCAACTTACCGGGCATGAACACCTTGGGCTTGGGCATGGCCCGAGTTGACATAGATGCTAATGGGATTGTCCCTCCGCACACACACCCACGGGCCTCAGAGGTAACCATCTGCCTCAAGGGCCGGCTTCTTGTGGGCTTTGTGGACACATCTAACCGTATTTTCACCCAACAATTAAACCCTGGCGAGTCATTTGTTTTTCCAAAGGGTCTCATTCATTTTCTATACAACTATGATTCAGCCCCGGCAGTGGCATTGGCCGGCTTGAGTAGCCAAAACCCTGGTGCACAGATTGTGTCTCTAGCCTCATTCACTTCAAAGCCTCCAATTGAGATTCAGATATTGAAAAGTTTTCAAATTACCGATCAAGACGTTGCCAGGATCCGAAAGAACCTCGGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

219

Amino Acids

23.71

Weight (kDa)

8.79

Isoelectric Point (pI)

20.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	65 - 208	9e-42	Cupin
Cupin_2	PF07883	100 - 171	3.2e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43341 FvH4_3g43342
rosa_chinensis	RchiOBHm_Chr3g0497221
rosa_laevigata	RLG00000022469
rosa_multiflora	Rmu_sc0000869.1_g000018
rosa_roxburghii	Rroxscaffold_4G00331510 Rroxscaffold_6G00388250 Rroxscaffold_6G00421640
rosa_rugosa	Rorug01G0131600.1 Rorug03G0292000 Rorug04G0439100 Rorug07G0306600
rosa_samantha	Rh1AG309600 Rh1BG121000 Rh1BG422000 Rh1CG290300 Rh1DG454700 Rh2AG238100 Rh2CG303800 Rh2CG398500 Rh2DG245600 Rh2DG339900 Rh3BG373300 Rh3CG152000 Rh3DG153000 Rh4BG233100 Rh6DG139100 Rh6DG164400 Rh7AG422700
rosa_wichuraiana	Rw1G027500 Rw3G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	254
AciI	CCGC	2 cut(s)	254, 332
AclWI	GGATC	3 cut(s)	71, 631, 644
AcoI	YGGCCR	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	6 cut(s)	86, 133, 235, 573, 601, 611
AjnI	CCWGG	3 cut(s)	436, 535, 632
AluBI	AGCT	2 cut(s)	39, 160
AluI	AGCT	2 cut(s)	39, 160
Alw21I	GWGCWC	2 cut(s)	142, 544
Alw26I	GTCTC	3 cut(s)	172, 470, 558
Alw44I	GTGCAC	2 cut(s)	138, 540
AlwI	GGATC	3 cut(s)	71, 631, 644
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	5 cut(s)	55, 294, 348, 376, 513
ApaLI	GTGCAC	2 cut(s)	138, 540
AseI	ATTAAT	1 cut(s)	150
AspS9I	GGNCC	4 cut(s)	55, 295, 348, 376
AsuC2I	CCSGG	3 cut(s)	204, 267, 500
AsuHPI	GGTGA	1 cut(s)	412
AsuNHI	GCTAGC	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	297
BaeGI	GKGCMC	2 cut(s)	142, 544
BamHI	GGATCC	1 cut(s)	636
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
Bbv12I	GWGCWC	2 cut(s)	142, 544
BbvCI	CCTCAGC	1 cut(s)	35
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	3 cut(s)	438, 537, 634
BcnI	CCSGG	3 cut(s)	204, 267, 500
BcoDI	GTCTC	3 cut(s)	172, 470, 558
BfaI	CTAG	2 cut(s)	161, 557
BglI	GCCNNNNNGGC	1 cut(s)	375
Bme1390I	CCNGG	6 cut(s)	204, 267, 438, 500, 537, 634
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	4 cut(s)	55, 295, 348, 376
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	6 cut(s)	204, 267, 438, 500, 537, 634
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	301
BmtI	GCTAGC	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	356, 541
BpuMI	CCSGG	3 cut(s)	204, 267, 500
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	6 cut(s)	279, 344, 436, 498, 535, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse118I	RCCGGY	2 cut(s)	378, 515
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	3 cut(s)	438, 537, 634
BseDI	CCNNGG	6 cut(s)	279, 344, 436, 498, 535, 649
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	3 cut(s)	49, 131, 366
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	2 cut(s)	142, 544
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	5 cut(s)	57, 296, 350, 378, 515
BsiHKAI	GWGCWC	2 cut(s)	142, 544
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	5 cut(s)	204, 266, 379, 500, 516
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	3 cut(s)	172, 470, 558
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	5 cut(s)	57, 296, 350, 378, 515
Bso31I	GGTCTC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	142, 544
Bsp143I	GATC	3 cut(s)	76, 619, 636
BspACI	CCGC	2 cut(s)	254, 332
BspANI	GGCC	5 cut(s)	57, 296, 350, 378, 515
BspCNI	CTCAG	3 cut(s)	48, 130, 365
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	638
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	3 cut(s)	71, 631, 644
BspQI	GCTCTTC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	470
BsrFI	RCCGGY	2 cut(s)	378, 515
BsrI	ACTGG	1 cut(s)	57
BssAI	RCCGGY	2 cut(s)	378, 515
BssECI	CCNNGG	6 cut(s)	279, 344, 436, 498, 535, 649
BssMI	GATC	3 cut(s)	76, 619, 636
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	3 cut(s)	438, 537, 634
Bst4CI	ACNGT	2 cut(s)	137, 413
Bst6I	CTCTTC	2 cut(s)	19, 51
BstC8I	GCNNGC	3 cut(s)	162, 380, 517
BstDEI	CTNAG	3 cut(s)	35, 117, 352
BstDSI	CCRYGG	1 cut(s)	344
BstEII	GGTNACC	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	254
BstKTI	GATC	3 cut(s)	79, 622, 639
BstMAI	GTCTC	3 cut(s)	172, 470, 558
BstMBI	GATC	3 cut(s)	76, 619, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	375, 525
BstNI	CCWGG	3 cut(s)	438, 537, 634
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	6 cut(s)	202, 265, 436, 498, 535, 632
BstSLI	GKGCMC	2 cut(s)	142, 544
BstUI	CGCG	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	76, 636
BstXI	CCANNNNNNTGG	1 cut(s)	536
BstYI	RGATCY	2 cut(s)	76, 636
BsuRI	GGCC	5 cut(s)	57, 296, 350, 378, 515
BtgI	CCRYGG	1 cut(s)	344
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	3 cut(s)	162, 380, 517
Cfr10I	RCCGGY	2 cut(s)	378, 515
Cfr13I	GGNCC	4 cut(s)	55, 295, 348, 376
CviAII	CATG	2 cut(s)	271, 292
DdeI	CTNAG	3 cut(s)	35, 117, 352
DpnI	GATC	3 cut(s)	78, 621, 638
DpnII	GATC	3 cut(s)	76, 619, 636
EaeI	YGGCCR	1 cut(s)	513
Eam1104I	CTCTTC	2 cut(s)	19, 51
EarI	CTCTTC	2 cut(s)	19, 51
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoRII	CCWGG	3 cut(s)	436, 535, 632
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	274, 295
FaiI	YATR	6 cut(s)	98, 272, 293, 308, 481, 489
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	270, 291
FspBI	CTAG	2 cut(s)	161, 557
HaeIII	GGCC	5 cut(s)	57, 296, 350, 378, 515
HapII	CCGG	5 cut(s)	204, 266, 379, 500, 516
Hin1II	CATG	2 cut(s)	274, 295
HincII	GTYRAC	2 cut(s)	259, 304
HindII	GTYRAC	2 cut(s)	259, 304
HinfI	GANTC	3 cut(s)	443, 491, 589
HpaII	CCGG	5 cut(s)	204, 266, 379, 500, 516
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	5 cut(s)	140, 259, 304, 400, 542
Hpy188I	TCNGA	4 cut(s)	355, 594, 641, 653
Hpy188III	TCNNGA	2 cut(s)	86, 623
Hpy8I	GTNNAC	5 cut(s)	140, 259, 304, 400, 542
HpyCH4III	ACNGT	2 cut(s)	137, 413
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	4 cut(s)	96, 140, 147, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	375, 525
HpyF3I	CTNAG	3 cut(s)	35, 117, 352
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	274, 295
KroI	GCCGGC	2 cut(s)	378, 515
KroNI	GCCGGC	2 cut(s)	380, 517
Kzo9I	GATC	3 cut(s)	76, 619, 636
LguI	GCTCTTC	1 cut(s)	51
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	161, 557
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	238, 358
MalI	GATC	3 cut(s)	78, 621, 638
MboI	GATC	3 cut(s)	76, 619, 636
MboII	GAAGA	2 cut(s)	6, 38
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	2 cut(s)	76, 636
MhlI	GDGCHC	2 cut(s)	142, 544
MluCI	AATT	3 cut(s)	428, 582, 612
MlyI	GAGTC	1 cut(s)	452
MroNI	GCCGGC	2 cut(s)	378, 515
MseI	TTAA	3 cut(s)	150, 431, 658
MspI	CCGG	5 cut(s)	204, 266, 379, 500, 516
MspR9I	CCNGG	6 cut(s)	204, 267, 438, 500, 537, 634
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	3 cut(s)	438, 537, 634
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	375, 525
NaeI	GCCGGC	2 cut(s)	380, 517
NciI	CCSGG	3 cut(s)	204, 267, 500
NdeII	GATC	3 cut(s)	76, 619, 636
NgoMIV	GCCGGC	2 cut(s)	378, 515
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	274, 295
NlaIV	GGNNCC	1 cut(s)	638
PciSI	GCTCTTC	1 cut(s)	51
PdiI	GCCGGC	2 cut(s)	380, 517
PfeI	GAWTC	2 cut(s)	491, 589
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PshBI	ATTAAT	1 cut(s)	150
Psp6I	CCWGG	3 cut(s)	436, 535, 632
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	3 cut(s)	436, 535, 632
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	4 cut(s)	55, 295, 348, 376
PsuI	RGATCY	2 cut(s)	76, 636
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	150, 431, 658
Sau3AI	GATC	3 cut(s)	76, 619, 636
Sau96I	GGNCC	4 cut(s)	55, 295, 348, 376
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	6 cut(s)	204, 267, 438, 500, 537, 634
SduI	GDGCHC	2 cut(s)	142, 544
SetI	ASST	7 cut(s)	41, 162, 281, 360, 630, 651, 658
SfaNI	GCATC	1 cut(s)	301
SmlI	CTYRAG	2 cut(s)	371, 520
SmoI	CTYRAG	2 cut(s)	371, 520
Sse9I	AATT	3 cut(s)	428, 582, 612
SsiI	CCGC	2 cut(s)	254, 332
SspMI	CTAG	2 cut(s)	161, 557
StyD4I	CCNGG	6 cut(s)	202, 265, 436, 498, 535, 632
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	137, 413
TaiI	ACGT	1 cut(s)	630
TasI	AATT	3 cut(s)	428, 582, 612
TfiI	GAWTC	2 cut(s)	491, 589
Tru1I	TTAA	3 cut(s)	150, 431, 658
Tru9I	TTAA	3 cut(s)	150, 431, 658
TscAI	CASTG	1 cut(s)	510
TspDTI	ATGAA	2 cut(s)	287, 461
TspRI	CASTG	1 cut(s)	510
VneI	GTGCAC	2 cut(s)	138, 540
VspI	ATTAAT	1 cut(s)	150
XspI	CTAG	2 cut(s)	161, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.