Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004851

Physical Location & Seq

Genomic Coordinates Reverse (-)

39848249 .. 39851613

Gene Structure 3365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG233100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCAGAAGAACCAAAGGATAACATATGCCGGCGACTCTTTGGCTCAAGCCTTGAAAGGAAGTGGGAGAAGGAGAAAGGCATGTGCATCGAGGAGGTCGGAGATAAAGGTCCAGTTTGAAGAAACCATCAACACACAGAGACTCGTCTGTTTTCAGGTTGAGATCTATGAGGATAACGATAATGCATGCGAGCAAGGACGAGTTTGCGGCTCTGCTCTCGGATCGATGACCAATATGTGTTCACTGCAGATTGAAACGTACGGATCCATAGGAGACATCCAGCTGCACGCACTAGTTGTTGATGCCAATGAGGAACATGAAGCACTGCTCAAACAGGAGCCTCAAGTGGAGAGAATGTTGTGGAGCACTGTGAAGTCCTTCCTTGATCCCAAGACAACTGAAAAGATTAATGTCCTTGGTGACAAGAGCAAGTTACTTCAAATAATTGATGCTAGATGGCTTTTCTTGGCATGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCCATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCAGTATTGAGACAGCGGTTGCTGCCGCAAGGCTTGGCGACACCATTCTAATTTCAGCAGGGGGAAAGCATCTTGCTTCTGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

208

Amino Acids

23.17

Weight (kDa)

6.44

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43341 FvH4_3g43342
rosa_chinensis	RchiOBHm_Chr3g0497221
rosa_laevigata	RLG00000022469
rosa_multiflora	Rmu_sc0000869.1_g000018
rosa_roxburghii	Rroxscaffold_4G00331510 Rroxscaffold_6G00388250 Rroxscaffold_6G00421640
rosa_rugosa	Rorug01G0131600.1 Rorug03G0292000 Rorug04G0439100 Rorug07G0306600
rosa_samantha	Rh1AG309600 Rh1BG121000 Rh1BG422000 Rh1CG290300 Rh1DG454700 Rh2AG238100 Rh2CG303800 Rh2CG398500 Rh2DG245600 Rh2DG339900 Rh3BG373300 Rh3CG152000 Rh3DG153000 Rh4BG233100 Rh6DG139100 Rh6DG164400 Rh7AG422700
rosa_wichuraiana	Rw1G027500 Rw3G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	207, 554, 564
AclWI	GGATC	6 cut(s)	229, 258, 271, 380, 498, 509
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	5 cut(s)	55, 119, 254, 440, 500
AhlI	ACTAGT	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	368
Alw26I	GTCTC	3 cut(s)	133, 267, 542
AlwI	GGATC	6 cut(s)	229, 258, 271, 380, 498, 509
ApeKI	GCWGC	3 cut(s)	283, 490, 560
AseI	ATTAAT	1 cut(s)	408
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	431, 467
AvaII	GGWCC	1 cut(s)	109
BamHI	GGATCC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	270, 477, 547
BccI	CCATC	2 cut(s)	134, 450
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	3 cut(s)	133, 267, 542
BcuI	ACTAGT	1 cut(s)	292
BfaI	CTAG	2 cut(s)	293, 453
BfmI	CTRYAG	1 cut(s)	245
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	5 cut(s)	208, 284, 491, 561, 564
BlsI	GCNGC	5 cut(s)	209, 285, 492, 562, 565
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	3 cut(s)	265, 339, 525
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	534
BmsI	GCATC	4 cut(s)	95, 292, 439, 616
BmuI	ACTGGG	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	526
BpuEI	CTTGAG	2 cut(s)	30, 327
Bsa29I	ATCGAT	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	112, 540
BseBI	CCWGG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	112, 540
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	270, 477, 547
BsgI	GTGCAG	1 cut(s)	269
BshVI	ATCGAT	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	30
BsiWI	CGTACG	1 cut(s)	258
BsmAI	GTCTC	3 cut(s)	133, 267, 542
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	6 cut(s)	162, 221, 263, 385, 503, 514
BspACI	CCGC	3 cut(s)	207, 554, 564
BspDI	ATCGAT	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	265, 339, 525
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	6 cut(s)	229, 258, 271, 380, 498, 509
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	112, 540
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	6 cut(s)	162, 221, 263, 385, 503, 514
BssNI	GRCGYC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	370
BstACI	GRCGYC	1 cut(s)	531
BstC8I	GCNNGC	4 cut(s)	31, 187, 191, 288
BstF5I	GGATG	1 cut(s)	276
BstKTI	GATC	6 cut(s)	165, 224, 266, 388, 506, 517
BstMAI	GTCTC	3 cut(s)	133, 267, 542
BstMBI	GATC	6 cut(s)	162, 221, 263, 385, 503, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	3 cut(s)	84, 189, 474
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	270, 477, 547
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	3 cut(s)	162, 263, 514
BstYI	RGATCY	3 cut(s)	162, 263, 514
Bsu15I	ATCGAT	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	276
BtsI	GCAGTG	2 cut(s)	242, 323
BtsIMutI	CAGTG	3 cut(s)	242, 323, 366
Cac8I	GCNNGC	4 cut(s)	31, 187, 191, 288
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	224
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	4 cut(s)	81, 186, 317, 471
CviJI	RGCY	9 cut(s)	44, 50, 210, 283, 340, 460, 490, 526, 571
CviKI_1	RGCY	9 cut(s)	44, 50, 210, 283, 340, 460, 490, 526, 571
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	6 cut(s)	164, 223, 265, 387, 505, 516
DpnII	GATC	6 cut(s)	162, 221, 263, 385, 503, 514
Eco130I	CCWWGG	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	4 cut(s)	84, 189, 320, 474
FaiI	YATR	9 cut(s)	25, 27, 82, 168, 187, 236, 269, 318, 472
FatI	CATG	4 cut(s)	80, 185, 316, 470
FauNDI	CATATG	1 cut(s)	25
Fnu4HI	GCNGC	5 cut(s)	208, 284, 491, 561, 564
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	5 cut(s)	208, 284, 491, 561, 564
FspBI	CTAG	2 cut(s)	293, 453
GluI	GCNGC	5 cut(s)	208, 284, 491, 561, 564
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	520
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	4 cut(s)	84, 189, 320, 474
HinfI	GANTC	2 cut(s)	35, 141
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	431, 467
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	100, 221, 619
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	63, 388
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	5 cut(s)	4, 86, 185, 247, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	257
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	4 cut(s)	84, 189, 320, 474
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	162, 221, 263, 385, 503, 514
LmnI	GCTCC	3 cut(s)	337, 363, 523
LpnPI	CCDG	9 cut(s)	43, 125, 140, 293, 320, 513, 540, 553, 582
Lsp1109I	GCAGC	3 cut(s)	270, 477, 547
LweI	GCATC	4 cut(s)	95, 292, 439, 616
MaeI	CTAG	2 cut(s)	293, 453
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	3 cut(s)	419, 432, 473
MalI	GATC	6 cut(s)	164, 223, 265, 387, 505, 516
MboI	GATC	6 cut(s)	162, 221, 263, 385, 503, 514
MboII	GAAGA	3 cut(s)	19, 131, 526
MflI	RGATCY	3 cut(s)	162, 263, 514
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	2 cut(s)	444, 588
MlyI	GAGTC	2 cut(s)	29, 135
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	6 cut(s)	84, 87, 163, 304, 351, 489
Mph1103I	ATGCAT	1 cut(s)	187
MroNI	GCCGGC	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	3 cut(s)	408, 510, 625
MspA1I	CMGCKG	2 cut(s)	283, 554
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	560
NaeI	GCCGGC	1 cut(s)	31
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	6 cut(s)	162, 221, 263, 385, 503, 514
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	4 cut(s)	84, 189, 320, 474
NlaIV	GGNNCC	3 cut(s)	265, 339, 525
NmuCI	GTSAC	2 cut(s)	419, 473
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	3 cut(s)	84, 189, 474
PaeI	GCATGC	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	377
Pfl23II	CGTACG	1 cut(s)	258
PkrI	GCNGC	5 cut(s)	209, 285, 492, 562, 565
PleI	GAGTC	2 cut(s)	29, 135
PpsI	GAGTC	2 cut(s)	29, 135
PshBI	ATTAAT	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspLI	CGTACG	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	265, 339, 525
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	249
PsuI	RGATCY	3 cut(s)	162, 263, 514
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	408, 510, 625
SatI	GCNGC	5 cut(s)	208, 284, 491, 561, 564
Sau3AI	GATC	6 cut(s)	162, 221, 263, 385, 503, 514
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	29, 135
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	5 cut(s)	98, 111, 159, 260, 285
SfaNI	GCATC	4 cut(s)	95, 292, 439, 616
SfcI	CTRYAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	45, 342
SmoI	CTYRAG	2 cut(s)	45, 342
SpeI	ACTAGT	1 cut(s)	292
SphI	GCATGC	1 cut(s)	189
Sse9I	AATT	2 cut(s)	444, 588
SsiI	CCGC	3 cut(s)	207, 554, 564
SspMI	CTAG	2 cut(s)	293, 453
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	89, 224
TasI	AATT	2 cut(s)	444, 588
TauI	GCSGC	2 cut(s)	210, 566
Tru1I	TTAA	3 cut(s)	408, 510, 625
Tru9I	TTAA	3 cut(s)	408, 510, 625
TscAI	CASTG	3 cut(s)	249, 330, 373
TseFI	GTSAC	2 cut(s)	419, 473
TseI	GCWGC	3 cut(s)	283, 490, 560
Tsp45I	GTSAC	2 cut(s)	419, 473
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	3 cut(s)	249, 330, 373
VpaK11BI	GGWCC	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	408
XceI	RCATGY	3 cut(s)	84, 189, 474
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	2 cut(s)	293, 453
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.