Rw3G029480

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0004851
Physical Location & Seq
Reverse (-)
45389643 .. 45390335
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029480.1

Sequence Viewer

Length: 693 bp
ATGGAGCAAGTCAAACAACCCGGAGCTAAGTCCTATGCCATCGATCCGGCTATGGCTGAAAGTTTGATCACCCGACTTGAGACTGAGTTATTGCATTTGAGGCAGGGTGATATGACGGTGTTGGAATATGGGCGACGTTTCAATAGCTTGTATCGTTTTGTGCCTGCCTTGATGGCTAATGAGAGGGATAAAATCCACAAATTTCTACAAGGACTACGCGATCAACTCCGTGTTATGTTAGCGGCTACCTTATTTACCGAGTTCAGTCAAGTATTTTTGGCCGCCATGAAGTGCGAGGACAGACTTTTGAAATGTGTACAACCATTAGAGGCGGGTTCCCCTAGCCCGAGACCATCTGAGAGGGCTACCGCTATTTCGAGGTCCGAGGCTTTGACCGGTAGTAGACCTGACAGTTTTGGGTCCGACTCTCGACAGAATTACAGAAGACGTGAACGGAGGCGGGGCAAGCACAAGCCACGAACCAAACAATCCAGGAGTAGTGTTAGCGGTTCTAGTAGAGGTTCTAGAAGACTTCCCATTCAGAGAGACCGTCCACAATGTCAGACGTGTGGCAGACACCATGATGGACAGTGCCAAGTAGGGAGTGTGGTATGTTATCATTGTGGCCAACATGGTCACTACTTGAGGACGTGCCCTCAACTGACTCAGGGAGCTACTTCAGTACCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

230

Amino Acids

26.04

Weight (kDa)

10.09

Isoelectric Point (pI)

67.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 24 - 74 2.2e-09 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 403
AccII CGCG 1 cut(s) 219
AciI CCGC 6 cut(s) 242, 282, 332, 369, 460, 507
AclWI GGATC 1 cut(s) 38
AcoI YGGCCR 2 cut(s) 279, 625
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 2 cut(s) 318, 684
AflIII ACRYGT 1 cut(s) 566
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 142, 310
AjiI CACGTC 3 cut(s) 449, 567, 651
AjnI CCWGG 1 cut(s) 491
AluBI AGCT 3 cut(s) 26, 147, 674
AluI AGCT 3 cut(s) 26, 147, 674
Alw26I GTCTC 3 cut(s) 74, 343, 540
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 2 cut(s) 279, 625
ApoI RAATTY 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 381, 420
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 61, 119
AvaI CYCGRG 1 cut(s) 346
AvaII GGWCC 2 cut(s) 381, 420
BaeGI GKGCMC 1 cut(s) 656
BaeI ACNNNNGTAYC 1 cut(s) 666
BalI TGGCCA 1 cut(s) 627
BbsI GAAGAC 2 cut(s) 451, 535
BccI CCATC 4 cut(s) 47, 166, 361, 578
BciT130I CCWGG 1 cut(s) 493
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 3 cut(s) 74, 343, 540
BfaI CTAG 3 cut(s) 342, 513, 525
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 2 cut(s) 243, 282
BlsI GCNGC 2 cut(s) 244, 283
Bme1390I CCNGG 2 cut(s) 21, 493
Bme18I GGWCC 2 cut(s) 381, 420
BmeT110I CYCGRG 1 cut(s) 346
BmgBI CACGTC 3 cut(s) 449, 567, 651
BmgT120I GGNCC 2 cut(s) 381, 420
BmiI GGNNCC 2 cut(s) 337, 421
BmrFI CCNGG 2 cut(s) 21, 493
BpiI GAAGAC 2 cut(s) 451, 535
BpuEI CTTGAG 2 cut(s) 98, 664
BpuMI CCSGG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 42
BsaI GGTCTC 2 cut(s) 343, 540
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 395
Bse118I RCCGGY 1 cut(s) 395
BseBI CCWGG 1 cut(s) 493
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 384
BseMII CTCAG 3 cut(s) 75, 348, 680
BseSI GKGCMC 1 cut(s) 656
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 281, 627
BshTI ACCGGT 1 cut(s) 395
BshVI ATCGAT 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 3 cut(s) 21, 47, 396
BsmAI GTCTC 3 cut(s) 74, 343, 540
BsnI GGCC 2 cut(s) 281, 627
Bso31I GGTCTC 2 cut(s) 343, 540
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 656
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 3 cut(s) 43, 66, 220
BspACI CCGC 6 cut(s) 242, 282, 332, 369, 460, 507
BspANI GGCC 2 cut(s) 281, 627
BspCNI CTCAG 3 cut(s) 76, 349, 679
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 337, 421
BspPI GGATC 1 cut(s) 38
BspTNI GGTCTC 2 cut(s) 343, 540
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 3 cut(s) 43, 66, 220
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 4 cut(s) 118, 413, 551, 591
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 165, 467
BstDEI CTNAG 4 cut(s) 27, 84, 357, 666
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 3 cut(s) 46, 69, 223
BstMAI GTCTC 3 cut(s) 74, 343, 540
BstMBI GATC 3 cut(s) 43, 66, 220
BstMWI GCNNNNNNNGC 3 cut(s) 100, 173, 466
BstNI CCWGG 1 cut(s) 493
BstSCI CCNGG 2 cut(s) 19, 491
BstSLI GKGCMC 1 cut(s) 656
BstUI CGCG 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 451, 535
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 2 cut(s) 281, 627
BsuTUI ATCGAT 1 cut(s) 42
BtrI CACGTC 3 cut(s) 449, 567, 651
BtsIMutI CAGTG 1 cut(s) 596
Cac8I GCNNGC 2 cut(s) 165, 467
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 2 cut(s) 381, 420
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 2 cut(s) 317, 683
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 3 cut(s) 286, 581, 632
CviQI GTAC 2 cut(s) 317, 683
DdeI CTNAG 4 cut(s) 27, 84, 357, 666
DpnI GATC 3 cut(s) 45, 68, 222
DpnII GATC 3 cut(s) 43, 66, 220
EaeI YGGCCR 2 cut(s) 279, 625
Eco31I GGTCTC 2 cut(s) 343, 540
Eco47I GGWCC 2 cut(s) 381, 420
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 491
FaeI CATG 3 cut(s) 289, 584, 635
FaiI YATR 9 cut(s) 36, 53, 113, 129, 236, 287, 582, 613, 633
FatI CATG 3 cut(s) 285, 580, 631
FauI CCCGC 2 cut(s) 325, 453
FbaI TGATCA 1 cut(s) 66
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 243, 282
Fsp4HI GCNGC 2 cut(s) 243, 282
FspBI CTAG 3 cut(s) 342, 513, 525
GluI GCNGC 2 cut(s) 243, 282
HaeIII GGCC 2 cut(s) 281, 627
HapII CCGG 3 cut(s) 21, 47, 396
Hin1II CATG 3 cut(s) 289, 584, 635
HinfI GANTC 2 cut(s) 425, 664
HpaII CCGG 3 cut(s) 21, 47, 396
HphI GGTGA 2 cut(s) 61, 119
Hpy166II GTNNAC 4 cut(s) 317, 404, 452, 554
Hpy188I TCNGA 6 cut(s) 358, 385, 424, 543, 564, 692
Hpy188III TCNNGA 2 cut(s) 429, 525
Hpy8I GTNNAC 4 cut(s) 317, 404, 452, 554
Hpy99I CGWCG 1 cut(s) 138
HpyCH4III ACNGT 4 cut(s) 118, 413, 551, 591
HpyCH4IV ACGT 4 cut(s) 136, 448, 566, 650
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 173, 466
HpyF3I CTNAG 4 cut(s) 27, 84, 357, 666
HpySE526I ACGT 4 cut(s) 136, 448, 566, 650
Hsp92II CATG 3 cut(s) 289, 584, 635
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 3 cut(s) 43, 66, 220
LmnI GCTCC 3 cut(s) 4, 23, 671
LpnPI CCDG 9 cut(s) 34, 60, 89, 177, 409, 420, 478, 505, 653
MaeI CTAG 3 cut(s) 342, 513, 525
MaeII ACGT 4 cut(s) 136, 448, 566, 650
MaeIII GTNAC 1 cut(s) 635
MalI GATC 3 cut(s) 45, 68, 222
MboI GATC 3 cut(s) 43, 66, 220
MboII GAAGA 2 cut(s) 456, 540
MhlI GDGCHC 1 cut(s) 656
MlsI TGGCCA 1 cut(s) 627
MluCI AATT 2 cut(s) 200, 436
MluNI TGGCCA 1 cut(s) 627
MlyI GAGTC 2 cut(s) 419, 658
MmeI TCCRAC 2 cut(s) 102, 447
Mox20I TGGCCA 1 cut(s) 627
MscI TGGCCA 1 cut(s) 627
MslI CAYNNNNRTG 1 cut(s) 582
Msp20I TGGCCA 1 cut(s) 627
MspI CCGG 3 cut(s) 21, 47, 396
MspR9I CCNGG 2 cut(s) 21, 493
MvaI CCWGG 1 cut(s) 493
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 3 cut(s) 100, 173, 466
NciI CCSGG 1 cut(s) 21
NdeII GATC 3 cut(s) 43, 66, 220
NlaIII CATG 3 cut(s) 289, 584, 635
NlaIV GGNNCC 2 cut(s) 337, 421
NmuCI GTSAC 1 cut(s) 635
PfoI TCCNGGA 1 cut(s) 491
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 2 cut(s) 244, 283
PleI GAGTC 2 cut(s) 419, 658
PpsI GAGTC 2 cut(s) 419, 658
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 2 cut(s) 337, 421
PspPI GGNCC 2 cut(s) 381, 420
RsaI GTAC 2 cut(s) 318, 684
RsaNI GTAC 2 cut(s) 317, 683
RseI CAYNNNNRTG 1 cut(s) 582
SatI GCNGC 2 cut(s) 243, 282
Sau3AI GATC 3 cut(s) 43, 66, 220
Sau96I GGNCC 2 cut(s) 381, 420
SchI GAGTC 2 cut(s) 419, 658
ScrFI CCNGG 2 cut(s) 21, 493
SduI GDGCHC 1 cut(s) 656
SinI GGWCC 2 cut(s) 381, 420
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 77, 643
SmoI CTYRAG 2 cut(s) 77, 643
Sse9I AATT 2 cut(s) 200, 436
SsiI CCGC 6 cut(s) 242, 282, 332, 369, 460, 507
SspMI CTAG 3 cut(s) 342, 513, 525
StyD4I CCNGG 2 cut(s) 19, 491
TaaI ACNGT 4 cut(s) 118, 413, 551, 591
TaiI ACGT 4 cut(s) 139, 451, 569, 653
TaqI TCGA 3 cut(s) 42, 377, 430
TasI AATT 2 cut(s) 200, 436
TatI WGTACW 1 cut(s) 316
TauI GCSGC 2 cut(s) 245, 284
TscAI CASTG 1 cut(s) 596
TseFI GTSAC 1 cut(s) 635
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 2 cut(s) 218, 469
TspRI CASTG 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 381, 420
XapI RAATTY 1 cut(s) 200
XbaI TCTAGA 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 403
XspI CTAG 3 cut(s) 342, 513, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.