Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004851

Physical Location & Seq

Genomic Coordinates Reverse (-)

25278160 .. 25281145

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG164400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTTATCATTAATGCTGGTTCTGGTTTTAGAATGTTGTGGAGCACTGTGAAGTCCTTCCTTGATCCCAAGACAACAGAAAAGATTAATGTCAGTATACCTTTTGAGCTAAAAGTCATAGTTCTTGTCAGGACCATATTATTAACTAGTGGAAGTTTATTCCTCCAGGTCCTTGGTGACAAGAGCAAGTTACTTCAAATAATTGATGCTAGATGGCTTTTCTTGGCGTGTCACCCTCACTTGTGGCTGCGAGTTGAACGATCCATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCAGCATTGAGACAGCGGTTGCTGCCGCAAGGCTTGGCGACACCATTCTAATTTCAGCAGGGGGAAAGCATCTTGCTTCTGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

127

Amino Acids

14.01

Weight (kDa)

9.3

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43341 FvH4_3g43342
rosa_chinensis	RchiOBHm_Chr3g0497221
rosa_laevigata	RLG00000022469
rosa_multiflora	Rmu_sc0000869.1_g000018
rosa_roxburghii	Rroxscaffold_4G00331510 Rroxscaffold_6G00388250 Rroxscaffold_6G00421640
rosa_rugosa	Rorug01G0131600.1 Rorug03G0292000 Rorug04G0439100 Rorug07G0306600
rosa_samantha	Rh1AG309600 Rh1BG121000 Rh1BG422000 Rh1CG290300 Rh1DG454700 Rh2AG238100 Rh2CG303800 Rh2CG398500 Rh2DG245600 Rh2DG339900 Rh3BG373300 Rh3CG152000 Rh3DG153000 Rh4BG233100 Rh6DG139100 Rh6DG164400 Rh7AG422700
rosa_wichuraiana	Rw1G027500 Rw3G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	2 cut(s)	311, 321
AclWI	GGATC	3 cut(s)	59, 255, 266
AcyI	GRCGYC	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	197, 257
AhlI	ACTAGT	1 cut(s)	146
AjnI	CCWGG	2 cut(s)	165, 283
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	3 cut(s)	59, 255, 266
ApeKI	GCWGC	2 cut(s)	247, 317
AseI	ATTAAT	2 cut(s)	12, 87
Asp700I	GAANNNNTTC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	132, 169
AsuHPI	GGTGA	2 cut(s)	188, 224
AvaII	GGWCC	2 cut(s)	132, 169
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	234, 304
BccI	CCATC	1 cut(s)	207
BciT130I	CCWGG	2 cut(s)	167, 285
BcoDI	GTCTC	1 cut(s)	299
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	147, 210
BisI	GCNGC	3 cut(s)	248, 318, 321
BlsI	GCNGC	3 cut(s)	249, 319, 322
Bme1390I	CCNGG	2 cut(s)	167, 285
Bme18I	GGWCC	2 cut(s)	132, 169
BmgT120I	GGNCC	2 cut(s)	132, 169
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	167, 285
BmsI	GCATC	2 cut(s)	196, 373
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	167, 285
BseDI	CCNNGG	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	234, 304
BseYI	CCCAGC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	64, 260, 271
BspACI	CCGC	2 cut(s)	311, 321
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	3 cut(s)	59, 255, 266
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	3 cut(s)	64, 260, 271
BssNAI	GTATAC	1 cut(s)	98
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	172
Bst1107I	GTATAC	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	167, 285
Bst4CI	ACNGT	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	67, 263, 274
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	64, 260, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	2 cut(s)	167, 285
BstSCI	CCNGG	2 cut(s)	165, 283
BstV1I	GCAGC	2 cut(s)	234, 304
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	271
BstZ17I	GTATAC	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	132, 169
CseI	GACGC	1 cut(s)	277
CviJI	RGCY	5 cut(s)	109, 217, 247, 283, 328
CviKI_1	RGCY	5 cut(s)	109, 217, 247, 283, 328
DpnI	GATC	3 cut(s)	66, 262, 273
DpnII	GATC	3 cut(s)	64, 260, 271
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	132, 169
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	165, 283
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaiI	YATR	3 cut(s)	98, 119, 137
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	248, 318, 321
Fsp4HI	GCNGC	3 cut(s)	248, 318, 321
FspBI	CTAG	2 cut(s)	147, 210
GluI	GCNGC	3 cut(s)	248, 318, 321
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	288
HphI	GGTGA	2 cut(s)	188, 224
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
Hsp92I	GRCGYC	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	64, 260, 271
LmnI	GCTCC	2 cut(s)	42, 280
LpnPI	CCDG	9 cut(s)	3, 9, 115, 152, 179, 270, 297, 310, 339
Lsp1109I	GCAGC	2 cut(s)	234, 304
LweI	GCATC	2 cut(s)	196, 373
MaeI	CTAG	2 cut(s)	147, 210
MaeIII	GTNAC	3 cut(s)	176, 189, 230
MalI	GATC	3 cut(s)	66, 262, 273
MboI	GATC	3 cut(s)	64, 260, 271
MboII	GAAGA	1 cut(s)	283
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	2 cut(s)	201, 345
MnlI	CCTC	2 cut(s)	173, 246
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	5 cut(s)	12, 87, 143, 267, 382
MspA1I	CMGCKG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	167, 285
MvaI	CCWGG	2 cut(s)	167, 285
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	3 cut(s)	64, 260, 271
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	176, 230
PdmI	GAANNNNTTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	249, 319, 322
PpuMI	RGGWCCY	1 cut(s)	169
PshBI	ATTAAT	2 cut(s)	12, 87
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	165, 283
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	2 cut(s)	165, 283
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	132, 169
PspPPI	RGGWCCY	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	271
SaqAI	TTAA	5 cut(s)	12, 87, 143, 267, 382
SatI	GCNGC	3 cut(s)	248, 318, 321
Sau3AI	GATC	3 cut(s)	64, 260, 271
Sau96I	GGNCC	2 cut(s)	132, 169
ScrFI	CCNGG	2 cut(s)	167, 285
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	3 cut(s)	103, 111, 171
SfaNI	GCATC	2 cut(s)	196, 373
SinI	GGWCC	2 cut(s)	132, 169
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	2 cut(s)	201, 345
SsiI	CCGC	2 cut(s)	311, 321
SspMI	CTAG	2 cut(s)	147, 210
StyD4I	CCNGG	2 cut(s)	165, 283
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	2 cut(s)	201, 345
TauI	GCSGC	1 cut(s)	323
Tru1I	TTAA	5 cut(s)	12, 87, 143, 267, 382
Tru9I	TTAA	5 cut(s)	12, 87, 143, 267, 382
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	2 cut(s)	176, 230
TseI	GCWGC	2 cut(s)	247, 317
Tsp45I	GTSAC	2 cut(s)	176, 230
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	132, 169
VspI	ATTAAT	2 cut(s)	12, 87
XmiI	GTMKAC	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	2 cut(s)	147, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.