Rh1CG290300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004851
Physical Location & Seq
Reverse (-)
56326104 .. 56327544
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG290300.1

Sequence Viewer

Length: 369 bp
ATGAGTACCATAGGAGACATCCAGCTGCACGCACTAGTTGCTGATGCCAATGAGGAACATGAAGCACTGCTCAAACAGGAGCCTCAAGTGGAGAGAATGTTGTGGAGCACTGTGAAGTCCTTCCTTGATCCCAAGACAACTGAAAAGATTAATGTCCTTGGTGACAAGAGCAAGTTACTTCAAATAATTGATGCTAGATGGCTTTTCTTGGCGTGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCCATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCAGCATTGAGACAGCGGTTGCTGCCGCAAGGCTTGGCGACACCATTCTAATTTCAGTAGGGGGAAAGCATCTTGCTTCTGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

122

Amino Acids

13.56

Weight (kDa)

5.77

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 296, 306
AclWI GGATC 3 cut(s) 122, 240, 251
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 2 cut(s) 182, 242
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 9, 284
AlwI GGATC 3 cut(s) 122, 240, 251
ApeKI GCWGC 3 cut(s) 25, 232, 302
AseI ATTAAT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 173, 209
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 3 cut(s) 12, 219, 289
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 9, 284
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 2 cut(s) 35, 195
BisI GCNGC 4 cut(s) 26, 233, 303, 306
BlsI GCNGC 4 cut(s) 27, 234, 304, 307
Bme1390I CCNGG 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 81, 267
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 3 cut(s) 34, 181, 358
BpiI GAAGAC 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 18
BseXI GCAGC 3 cut(s) 12, 219, 289
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 9, 284
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 127, 245, 256
BspACI CCGC 2 cut(s) 296, 306
BspLI GGNNCC 2 cut(s) 81, 267
BspPI GGATC 3 cut(s) 122, 240, 251
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 3 cut(s) 127, 245, 256
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 3 cut(s) 130, 248, 259
BstMAI GTCTC 2 cut(s) 9, 284
BstMBI GATC 3 cut(s) 127, 245, 256
BstMWI GCNNNNNNNGC 2 cut(s) 38, 302
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 12, 219, 289
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtsCI GGATG 1 cut(s) 18
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 65, 108
Cac8I GCNNGC 1 cut(s) 30
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 59
CviJI RGCY 6 cut(s) 25, 82, 202, 232, 268, 313
CviKI_1 RGCY 6 cut(s) 25, 82, 202, 232, 268, 313
CviQI GTAC 1 cut(s) 6
DpnI GATC 3 cut(s) 129, 247, 258
DpnII GATC 3 cut(s) 127, 245, 256
Eco130I CCWWGG 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 62
FaiI YATR 2 cut(s) 11, 60
FatI CATG 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 26, 233, 303, 306
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 4 cut(s) 26, 233, 303, 306
FspBI CTAG 2 cut(s) 35, 195
GluI GCNGC 4 cut(s) 26, 233, 303, 306
GsaI CCCAGC 1 cut(s) 285
HgaI GACGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 1 cut(s) 62
HphI GGTGA 2 cut(s) 173, 209
Hpy188I TCNGA 1 cut(s) 361
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 302
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 1 cut(s) 62
Kzo9I GATC 3 cut(s) 127, 245, 256
LmnI GCTCC 3 cut(s) 79, 105, 265
LpnPI CCDG 5 cut(s) 35, 62, 255, 282, 295
Lsp1109I GCAGC 3 cut(s) 12, 219, 289
LweI GCATC 3 cut(s) 34, 181, 358
MaeI CTAG 2 cut(s) 35, 195
MaeIII GTNAC 3 cut(s) 161, 174, 215
MalI GATC 3 cut(s) 129, 247, 258
MboI GATC 3 cut(s) 127, 245, 256
MboII GAAGA 1 cut(s) 268
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 2 cut(s) 186, 330
MnlI CCTC 3 cut(s) 46, 93, 231
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 3 cut(s) 150, 252, 367
MspA1I CMGCKG 2 cut(s) 25, 296
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 38, 302
NdeII GATC 3 cut(s) 127, 245, 256
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 2 cut(s) 81, 267
NmuCI GTSAC 2 cut(s) 161, 215
PdmI GAANNNNTTC 1 cut(s) 119
PkrI GCNGC 4 cut(s) 27, 234, 304, 307
PshBI ATTAAT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 81, 267
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 3 cut(s) 150, 252, 367
SatI GCNGC 4 cut(s) 26, 233, 303, 306
Sau3AI GATC 3 cut(s) 127, 245, 256
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 110
SetI ASST 1 cut(s) 27
SfaNI GCATC 3 cut(s) 34, 181, 358
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 2 cut(s) 186, 330
SsiI CCGC 2 cut(s) 296, 306
SspMI CTAG 2 cut(s) 35, 195
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 112
TasI AATT 2 cut(s) 186, 330
TauI GCSGC 1 cut(s) 308
Tru1I TTAA 3 cut(s) 150, 252, 367
Tru9I TTAA 3 cut(s) 150, 252, 367
TscAI CASTG 2 cut(s) 72, 115
TseFI GTSAC 2 cut(s) 161, 215
TseI GCWGC 3 cut(s) 25, 232, 302
Tsp45I GTSAC 2 cut(s) 161, 215
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 2 cut(s) 72, 115
VspI ATTAAT 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 35, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.