Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004851

Physical Location & Seq

Genomic Coordinates Reverse (-)

12712648 .. 12719372

Gene Structure 6725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTGCATTGAGGAGGAGATAAGTTTGGAGATAAAGGTCCAGTTTGAAGAAATCATCTACACAGAGACTCGTATAAGCGCTTGTAAATTCTGGAAATTGGTTGTTACTATTTTCAGGCAAGGACAAGTTTGCAGCTCTGCTCTCGGAGGTCAAGCTGCCACAGCCACCAATATGTGTTCACTGCATAGATTGAAACGGATCCATGAGTACCATAGGAGACATCCAGCTGCACTAGTTGTTGATGCCAATGAGGAAAATGAAGCACTGCTCAAACAGGAGCCTCAAGTGGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

98

Amino Acids

11.28

Weight (kDa)

6.07

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004851)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43341 FvH4_3g43342
rosa_chinensis	RchiOBHm_Chr3g0497221
rosa_laevigata	RLG00000022469
rosa_multiflora	Rmu_sc0000869.1_g000018
rosa_roxburghii	Rroxscaffold_4G00331510 Rroxscaffold_6G00388250 Rroxscaffold_6G00421640
rosa_rugosa	Rorug01G0131600.1 Rorug03G0292000 Rorug04G0439100 Rorug07G0306600
rosa_samantha	Rh1AG309600 Rh1BG121000 Rh1BG422000 Rh1CG290300 Rh1DG454700 Rh2AG238100 Rh2CG303800 Rh2CG398500 Rh2DG245600 Rh2DG339900 Rh3BG373300 Rh3CG152000 Rh3DG153000 Rh4BG233100 Rh6DG139100 Rh6DG164400 Rh7AG422700
rosa_wichuraiana	Rw1G027500 Rw3G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	193, 206
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	1 cut(s)	209
AfeI	AGCGCT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	47, 193
AhlI	ACTAGT	1 cut(s)	232
AluBI	AGCT	3 cut(s)	135, 155, 227
AluI	AGCT	3 cut(s)	135, 155, 227
Alw26I	GTCTC	2 cut(s)	59, 211
AlwI	GGATC	2 cut(s)	193, 206
Aor51HI	AGCGCT	1 cut(s)	79
ApeKI	GCWGC	3 cut(s)	132, 155, 227
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	142, 144, 214
BcoDI	GTCTC	2 cut(s)	59, 211
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	3 cut(s)	133, 156, 228
BlsI	GCNGC	3 cut(s)	134, 157, 229
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	200, 279
BmsI	GCATC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	2 cut(s)	26, 29
BseXI	GCAGC	3 cut(s)	142, 144, 214
BsgI	GTGCAG	1 cut(s)	213
BsmAI	GTCTC	2 cut(s)	59, 211
Bsp143I	GATC	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	200, 279
BspPI	GGATC	2 cut(s)	193, 206
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	2 cut(s)	59, 211
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstV1I	GCAGC	3 cut(s)	142, 144, 214
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	2 cut(s)	179, 263
BtsIMutI	CAGTG	2 cut(s)	179, 263
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	5 cut(s)	135, 155, 164, 227, 280
CviKI_1	RGCY	5 cut(s)	135, 155, 164, 227, 280
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	37
Eco47III	AGCGCT	1 cut(s)	79
FaeI	CATG	1 cut(s)	206
FaiI	YATR	5 cut(s)	74, 173, 186, 204, 213
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	133, 156, 228
FokI	GGATG	1 cut(s)	207
Fsp4HI	GCNGC	3 cut(s)	133, 156, 228
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	133, 156, 228
HaeII	RGCGCY	1 cut(s)	81
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	179
HpyCH4V	TGCA	4 cut(s)	6, 132, 184, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	53, 76, 100, 237, 260
Lsp1109I	GCAGC	3 cut(s)	142, 144, 214
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	2 cut(s)	86, 95
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	5 cut(s)	4, 7, 140, 244, 291
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	200, 279
PkrI	GCNGC	3 cut(s)	134, 157, 229
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	200, 279
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	170
SatI	GCNGC	3 cut(s)	133, 156, 228
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	61
SetI	ASST	5 cut(s)	39, 137, 151, 157, 229
SfaNI	GCATC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	2 cut(s)	86, 95
SspMI	CTAG	1 cut(s)	233
TasI	AATT	2 cut(s)	86, 95
TscAI	CASTG	2 cut(s)	186, 270
TseI	GCWGC	3 cut(s)	132, 155, 227
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	2 cut(s)	186, 270
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	86
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.