Rw1G027500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004851
Physical Location & Seq
Reverse (-)
54981276 .. 54982326
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027500.1

Sequence Viewer

Length: 306 bp
ATGTTTATCATTAATGCTGGTTCTGGTTTTAGAATGTTGTGGAGCACTGTGAAGTCCTTCCTTGATCCCAAGACAACTGAAAAGATTAATGTCCTTGGTGACAAGAGCAAGTTACTTCAAATAATTGATGCTAGATGGCTTTTCTTGGCGTGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCCATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCAGCATTGAGACAGCGGTTGCTGCCGCAAGGCTTGGCGACACCATTCTAATTTCAGTAGGGGGAAAGCATCTTGCTTCTGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

101

Amino Acids

11.19

Weight (kDa)

9.36

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 1 - 44 4e-08 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 233, 243
AclWI GGATC 3 cut(s) 59, 177, 188
AcyI GRCGYC 1 cut(s) 210
AgsI TTSAA 2 cut(s) 119, 179
AjnI CCWGG 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 3 cut(s) 59, 177, 188
ApeKI GCWGC 2 cut(s) 169, 239
AseI ATTAAT 2 cut(s) 12, 87
Asp700I GAANNNNTTC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 110, 146
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 156, 226
BccI CCATC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 1 cut(s) 132
BisI GCNGC 3 cut(s) 170, 240, 243
BlsI GCNGC 3 cut(s) 171, 241, 244
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 118, 295
BpiI GAAGAC 1 cut(s) 205
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 156, 226
BseYI CCCAGC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 3 cut(s) 64, 182, 193
BspACI CCGC 2 cut(s) 233, 243
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 3 cut(s) 59, 177, 188
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 3 cut(s) 64, 182, 193
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 210
BstKTI GATC 3 cut(s) 67, 185, 196
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 64, 182, 193
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 156, 226
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 45
CseI GACGC 1 cut(s) 199
CviJI RGCY 4 cut(s) 139, 169, 205, 250
CviKI_1 RGCY 4 cut(s) 139, 169, 205, 250
DpnI GATC 3 cut(s) 66, 184, 195
DpnII GATC 3 cut(s) 64, 182, 193
Eco130I CCWWGG 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 170, 240, 243
Fsp4HI GCNGC 3 cut(s) 170, 240, 243
FspBI CTAG 1 cut(s) 132
GluI GCNGC 3 cut(s) 170, 240, 243
GsaI CCCAGC 1 cut(s) 222
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 210
HphI GGTGA 2 cut(s) 110, 146
Hpy188I TCNGA 1 cut(s) 298
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 210
Kzo9I GATC 3 cut(s) 64, 182, 193
LmnI GCTCC 2 cut(s) 42, 202
LpnPI CCDG 5 cut(s) 3, 9, 192, 219, 232
Lsp1109I GCAGC 2 cut(s) 156, 226
LweI GCATC 2 cut(s) 118, 295
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 3 cut(s) 98, 111, 152
MalI GATC 3 cut(s) 66, 184, 195
MboI GATC 3 cut(s) 64, 182, 193
MboII GAAGA 1 cut(s) 205
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 2 cut(s) 123, 267
MnlI CCTC 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 4 cut(s) 12, 87, 189, 304
MspA1I CMGCKG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 3 cut(s) 64, 182, 193
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 98, 152
PdmI GAANNNNTTC 1 cut(s) 56
PkrI GCNGC 3 cut(s) 171, 241, 244
PshBI ATTAAT 2 cut(s) 12, 87
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 193
SaqAI TTAA 4 cut(s) 12, 87, 189, 304
SatI GCNGC 3 cut(s) 170, 240, 243
Sau3AI GATC 3 cut(s) 64, 182, 193
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 47
SfaNI GCATC 2 cut(s) 118, 295
Sse9I AATT 2 cut(s) 123, 267
SsiI CCGC 2 cut(s) 233, 243
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 49
TasI AATT 2 cut(s) 123, 267
TauI GCSGC 1 cut(s) 245
Tru1I TTAA 4 cut(s) 12, 87, 189, 304
Tru9I TTAA 4 cut(s) 12, 87, 189, 304
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 2 cut(s) 98, 152
TseI GCWGC 2 cut(s) 169, 239
Tsp45I GTSAC 2 cut(s) 98, 152
TspRI CASTG 1 cut(s) 52
VspI ATTAAT 2 cut(s) 12, 87
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.