FvH4_4g05610

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004892
Physical Location & Seq
Reverse (-)
4884414 .. 4885107
694 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05610.t1

Sequence Viewer

Length: 384 bp
ATGAGTTCATCATCTTACCCATATGTTCTTATTCCGCTCATGATGCTGCTACTGGTTTATGTAACCACACCGGTCGATGGGAAAGTAACGGTCACGATCACCAACACTCTTCCCGGCAATCCAGATCTTACGCTACACTGTAAATCTAAGGACGATGATCTTGGAGAACACCTACTGCACCCTGGGAACAGCTACCACTTCAGGTTTGGGGTATCCTGGATTGGCACTACGATGTTCTGGTGCACATTTCAGTGGTCTGGACAATCGAAATATTTCCATGTCTACGACAATGATAGAGATGACTGCAACGCTTGCACTTGGACTTTGAGAGAAGCTGGCCCTTGTTTGCAAGGCAAGAAAGAGACTTGCTATGTGTGGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

128

Amino Acids

14.56

Weight (kDa)

6.15

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 126 1.8e-27 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 37
AccI GTMKAC 1 cut(s) 282
AciI CCGC 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 70
AjnI CCWGG 2 cut(s) 181, 215
AluBI AGCT 2 cut(s) 192, 335
AluI AGCT 2 cut(s) 192, 335
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 356
Alw44I GTGCAC 1 cut(s) 241
AoxI GGCC 1 cut(s) 337
ApaLI GTGCAC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 46
AsiGI ACCGGT 1 cut(s) 70
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 33
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 183, 217
BciVI GTATCC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 356
BfuI GTATCC 1 cut(s) 223
BglII AGATCT 1 cut(s) 124
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 3 cut(s) 114, 183, 217
BmgT120I GGNCC 1 cut(s) 338
BmrFI CCNGG 3 cut(s) 114, 183, 217
BmsI GCATC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 181, 182
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 2 cut(s) 183, 217
BseDI CCNNGG 2 cut(s) 181, 182
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 339
BshTI ACCGGT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 71, 114
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 356
BsnI GGCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 96, 124, 157
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 339
BspHI TCATGA 1 cut(s) 39
BsrBI CCGCTC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 181, 182
BssMI GATC 3 cut(s) 96, 124, 157
Bst2UI CCWGG 2 cut(s) 183, 217
Bst4CI ACNGT 2 cut(s) 91, 140
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 313, 337
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 3 cut(s) 99, 127, 160
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 3 cut(s) 96, 124, 157
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 43, 312
BstNI CCWGG 2 cut(s) 183, 217
BstSCI CCNGG 3 cut(s) 112, 181, 215
BstSLI GKGCMC 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 136, 257
Cac8I GCNNGC 2 cut(s) 313, 337
CciI TCATGA 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 338
CspAI ACCGGT 1 cut(s) 70
CviAII CATG 2 cut(s) 40, 278
CviJI RGCY 3 cut(s) 192, 335, 339
CviKI_1 RGCY 3 cut(s) 192, 335, 339
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 98, 126, 159
DpnII GATC 3 cut(s) 96, 124, 157
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 181, 215
FaeI CATG 2 cut(s) 43, 281
FaiI YATR 6 cut(s) 22, 24, 41, 60, 279, 372
FatI CATG 2 cut(s) 39, 277
FauNDI CATATG 1 cut(s) 22
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 339
HapII CCGG 2 cut(s) 71, 114
Hin1II CATG 2 cut(s) 43, 281
HpaII CCGG 2 cut(s) 71, 114
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 243, 283
Hpy188III TCNNGA 4 cut(s) 40, 94, 122, 258
Hpy8I GTNNAC 2 cut(s) 243, 283
HpyCH4III ACNGT 2 cut(s) 91, 140
HpyCH4V TGCA 5 cut(s) 178, 243, 306, 315, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 312
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 2 cut(s) 43, 281
Kzo9I GATC 3 cut(s) 96, 124, 157
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 33
MaeIII GTNAC 3 cut(s) 61, 85, 91
MalI GATC 3 cut(s) 98, 126, 159
MbiI CCGCTC 1 cut(s) 37
MboI GATC 3 cut(s) 96, 124, 157
MboII GAAGA 1 cut(s) 101
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 272
MslI CAYNNNNRTG 2 cut(s) 230, 250
MspI CCGG 2 cut(s) 71, 114
MspR9I CCNGG 3 cut(s) 114, 183, 217
MvaI CCWGG 2 cut(s) 183, 217
MwoI GCNNNNNNNGC 2 cut(s) 43, 312
NciI CCSGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 22
NdeII GATC 3 cut(s) 96, 124, 157
NlaIII CATG 2 cut(s) 43, 281
NmuCI GTSAC 1 cut(s) 91
PagI TCATGA 1 cut(s) 39
PasI CCCWGGG 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 215
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 1 cut(s) 48
Psp6I CCWGG 2 cut(s) 181, 215
PspGI CCWGG 2 cut(s) 181, 215
PspPI GGNCC 1 cut(s) 338
PsuI RGATCY 1 cut(s) 124
RseI CAYNNNNRTG 2 cut(s) 230, 250
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 3 cut(s) 96, 124, 157
Sau96I GGNCC 1 cut(s) 338
ScrFI CCNGG 3 cut(s) 114, 183, 217
SduI GDGCHC 1 cut(s) 245
SetI ASST 4 cut(s) 174, 194, 206, 337
SfaNI GCATC 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 230, 250
SsiI CCGC 1 cut(s) 35
SspI AATATT 1 cut(s) 272
StyD4I CCNGG 3 cut(s) 112, 181, 215
TaaI ACNGT 2 cut(s) 91, 140
TaqI TCGA 2 cut(s) 75, 266
TscAI CASTG 2 cut(s) 143, 257
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 91
TspRI CASTG 2 cut(s) 143, 257
VneI GTGCAC 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.