MD05G1264800.v1.1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0004892
Physical Location & Seq
Reverse (-)
39987829 .. 39988227
399 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1264800.v1.1.491

Sequence Viewer

Length: 399 bp
ATGAGTCCCTTCCCAAGAAATGTGATTCTCCTTGTGTTGGTGCTATTCATCACTTCAAAAACCACCAATGCTTGGACCATCCTTCGCAGGCACGTAACCGTTACTATCAAGAACAACCTAGAGACAAAGGTGGACTTGAAGGTTCACTGTAAATCCGCTGATGATGATCTCGGCGAGCACGTTATTCGTCCGAGCGAAAACTATGAGTTTAAGTTCTCAACAACGTATTTTTATCGAGAAACACTATTTTTTTGTGGCTTCACATTTTCAAATCAATTTCAGTGGTTTGATATATACAAGCAAAACACAGATGAGTGTCGGCATTGCTATTGGTATGTAGGTGAGGATGGCCCTTGTTTGGATGGCACGGCTTGTCTTCCGTGGAACCCAAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

133

Amino Acids

15.61

Weight (kDa)

6.07

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 33 - 120 7.3e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 72
AciI CCGC 1 cut(s) 156
AfiI CCNNNNNNNGG 3 cut(s) 37, 72, 358
AgsI TTSAA 3 cut(s) 57, 139, 270
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 75, 350
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 3 cut(s) 86, 341, 356
BceAI ACGGC 1 cut(s) 384
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 2 cut(s) 75, 350
BmiI GGNNCC 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 380
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 72, 358
Bse3DI GCAATG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 380
BseGI GGATG 3 cut(s) 78, 352, 367
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 3 cut(s) 37, 72, 358
BseMI GCAATG 1 cut(s) 322
BshFI GGCC 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 180
BslI CCNNNNNNNGG 3 cut(s) 37, 72, 358
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 100, 149
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 89, 176
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 3 cut(s) 78, 352, 367
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 3 cut(s) 78, 352, 367
BtsIMutI CAGTG 2 cut(s) 145, 287
Cac8I GCNNGC 2 cut(s) 89, 176
Cfr13I GGNCC 2 cut(s) 75, 350
CspCI CAANNNNNGTGG 2 cut(s) 263, 298
CviJI RGCY 3 cut(s) 258, 351, 371
CviKI_1 RGCY 3 cut(s) 258, 351, 371
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 75
FaiI YATR 4 cut(s) 204, 293, 295, 336
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FokI GGATG 3 cut(s) 65, 359, 374
FspBI CTAG 1 cut(s) 119
HaeIII GGCC 1 cut(s) 351
HinfI GANTC 2 cut(s) 4, 25
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 133, 145
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 2 cut(s) 109, 236
Hpy8I GTNNAC 2 cut(s) 133, 145
HpyAV CCTTC 3 cut(s) 19, 92, 133
HpyCH4III ACNGT 2 cut(s) 100, 149
HpyCH4IV ACGT 3 cut(s) 93, 180, 224
HpySE526I ACGT 3 cut(s) 93, 180, 224
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 1 cut(s) 73
MaeI CTAG 1 cut(s) 119
MaeII ACGT 3 cut(s) 93, 180, 224
MaeIII GTNAC 2 cut(s) 94, 100
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 275
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 1 cut(s) 337
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 158
NdeII GATC 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 386
NmeAIII GCCGAG 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 72
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 2 cut(s) 75, 350
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 2 cut(s) 75, 350
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 96, 120, 132, 144, 183, 227, 343
SinI GGWCC 1 cut(s) 75
Sse9I AATT 1 cut(s) 275
SsiI CCGC 1 cut(s) 156
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 100, 149
TaiI ACGT 3 cut(s) 96, 183, 227
TaqI TCGA 1 cut(s) 235
TasI AATT 1 cut(s) 275
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 152, 287
TspDTI ATGAA 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 2 cut(s) 152, 287
Van91I CCANNNNNTGG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 75
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.