MD00G1101200.v1.1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0004892
Physical Location & Seq
Reverse (-)
21457929 .. 21458339
411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1101200.v1.1.491

Sequence Viewer

Length: 411 bp
ATGAGCCATTTTCTGAGAAAGGTTCTTGTTCTGCATATGTTGTTAATGGTTATTCTCCTCAACACAAATACACTTAAGGCTGCAATATTTGATGCTCCAAAAGAAATATCCGTCAAGATCACCAATGTTCTGGAAAGCAACGAGAACCTGACAGTCCACTGTAAGTCGGGTGACAATGACCTCGGTGTACAGGTACTCAAGCCTAATGTCATCTATGAGTTTAATTTCAAAACCAATGTTTGGGGATCGACATTATTCTTTTGCGGCTTTAGTTGGTCGAAGGAGTTTCATTGGTTCGACATTTTTAAGGCCAAAAGGGATGATTGCAGCGAGTGCCCTTGGTCAATATTTCAAGCTGGCCCTTGTTTGTATGGTCCTAAAGGTATTTGCTATCAGTGGAACAGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

137

Amino Acids

15.73

Weight (kDa)

8.22

Isoelectric Point (pI)

17.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 38 - 133 1.1e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AciI CCGC 1 cut(s) 264
AclWI GGATC 1 cut(s) 253
AfaI GTAC 2 cut(s) 189, 195
AfiI CCNNNNNNNGG 1 cut(s) 240
AflII CTTAAG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 229, 353
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
AlwI GGATC 1 cut(s) 253
AoxI GGCC 2 cut(s) 309, 358
ApeKI GCWGC 2 cut(s) 80, 327
AspS9I GGNCC 2 cut(s) 359, 374
AsuHPI GGTGA 2 cut(s) 112, 182
AvaII GGWCC 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 67, 339
BfrI CTTAAG 1 cut(s) 74
BisI GCNGC 3 cut(s) 81, 265, 328
BlsI GCNGC 3 cut(s) 82, 266, 329
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 359, 374
BmsI GCATC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 181, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 181, 338
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 338
BseXI GCAGC 2 cut(s) 67, 339
BshFI GGCC 2 cut(s) 311, 360
BslI CCNNNNNNNGG 1 cut(s) 240
BsnI GGCC 2 cut(s) 311, 360
Bsp1286I GDGCHC 1 cut(s) 338
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 117, 245
BspACI CCGC 1 cut(s) 264
BspANI GGCC 2 cut(s) 311, 360
BspCNI CTCAG 1 cut(s) 6
BspPI GGATC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 181, 338
BssMI GATC 2 cut(s) 117, 245
BssT1I CCWWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 154, 161, 408
BstAFI CTTAAG 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 333
BstAUI TGTACA 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 2 cut(s) 120, 248
BstMBI GATC 2 cut(s) 117, 245
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 338
BstV1I GCAGC 2 cut(s) 67, 339
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 2 cut(s) 311, 360
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 157, 401
Cac8I GCNNGC 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 359, 374
Csp6I GTAC 2 cut(s) 188, 194
CviJI RGCY 7 cut(s) 6, 80, 202, 267, 311, 356, 360
CviKI_1 RGCY 7 cut(s) 6, 80, 202, 267, 311, 356, 360
CviQI GTAC 2 cut(s) 188, 194
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 119, 247
DpnII GATC 2 cut(s) 117, 245
Eco130I CCWWGG 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaiI YATR 4 cut(s) 36, 38, 216, 372
FauNDI CATATG 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 81, 265, 328
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 3 cut(s) 81, 265, 328
GluI GCNGC 3 cut(s) 81, 265, 328
HaeIII GGCC 2 cut(s) 311, 360
HphI GGTGA 2 cut(s) 112, 182
Hpy166II GTNNAC 2 cut(s) 157, 188
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 115, 131
Hpy8I GTNNAC 2 cut(s) 157, 188
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 3 cut(s) 154, 161, 408
HpyCH4V TGCA 3 cut(s) 34, 83, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 14
Kzo9I GATC 2 cut(s) 117, 245
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 116, 161, 176, 342
Lsp1109I GCAGC 2 cut(s) 67, 339
LweI GCATC 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 119, 247
MboI GATC 2 cut(s) 117, 245
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 1 cut(s) 223
MnlI CCTC 2 cut(s) 68, 191
MseI TTAA 4 cut(s) 44, 75, 222, 306
MspCI CTTAAG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 333
NdeI CATATG 1 cut(s) 36
NdeII GATC 2 cut(s) 117, 245
NmuCI GTSAC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 3 cut(s) 82, 266, 329
PspPI GGNCC 2 cut(s) 359, 374
RsaI GTAC 2 cut(s) 189, 195
RsaNI GTAC 2 cut(s) 188, 194
SaqAI TTAA 4 cut(s) 44, 75, 222, 306
SatI GCNGC 3 cut(s) 81, 265, 328
Sau3AI GATC 2 cut(s) 117, 245
Sau96I GGNCC 2 cut(s) 359, 374
SduI GDGCHC 1 cut(s) 338
SetI ASST 6 cut(s) 24, 150, 183, 195, 358, 385
SfaNI GCATC 1 cut(s) 82
SinI GGWCC 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 74, 197
SmoI CTYRAG 2 cut(s) 74, 197
Sse9I AATT 1 cut(s) 223
SsiI CCGC 1 cut(s) 264
SspI AATATT 2 cut(s) 87, 348
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 3 cut(s) 154, 161, 408
TaqI TCGA 3 cut(s) 248, 278, 297
TasI AATT 1 cut(s) 223
TatI WGTACW 1 cut(s) 187
TauI GCSGC 1 cut(s) 267
Tru1I TTAA 4 cut(s) 44, 75, 222, 306
Tru9I TTAA 4 cut(s) 44, 75, 222, 306
TscAI CASTG 2 cut(s) 164, 401
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 80, 327
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 2 cut(s) 164, 401
Van91I CCANNNNNTGG 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.