Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004892

Physical Location & Seq

Genomic Coordinates Reverse (-)

12201127 .. 12202002

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0154000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTGAGAAAGACCAGCAGGCCTACGCATCGGCAAATGGCTACACCAGATCAAATGATCACGAATCGGCTGAAGCCACCTTCCAATCCGAGGAGGAGTTGAAACGCCAGAAGAGAAGGAAGTTGTTTATGTATATTGGTACTTTTATCGTCTTTCAAATCATAGTCATGACCTTATTCGCTCTCACTGTCATGAAAGTTAAGACCCCTGGGCTCAAGTTGGGTAATATCGATGTCCAAAACCTCAATTTCACCGCTCAAACACCACCCTCTTTCGAAATGACCTTCACAACCCAGATTAGAATCAAGAACGCAAATTTTGGTCCCTACAAATATGACAGTAGCTATGTCACGTTTTTGTACCAGGGGATGACATTAGTGCAGGTTACAATTCCTAAGGGTAAGGCTGGGGGGCGTTTGACAACAAAAATTGGAGCCACCGTGATTCTGAATTCCAAGGCATTGCCGAGAGTCTCAAATCTTGGTAGTGATTTGGATTCCGGGGTGTTGAAGCTTAGCAGCCAAGCAAAGATTAGCGGGAAAGTTGTATTGATGTTCGTGATGAAGAAGAAGAAATCTGCAGAGATGAATTGTACCATTGAAGTTAATTTGGCAACCAAGAGGGTTCAGGCATTGGAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

215

Amino Acids

23.93

Weight (kDa)

9.8

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004892)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05610
malus_domestica	MD00G1101200.v1.1 MD05G1264800.v1.1 MD05G1264900.v1.1 MD13G1228100.v1.1 MD13G1228300.v1.1
prunus_persica	Prupe.1G057700_v2.0.a1 Prupe.1G057800_v2.0.a1 Prupe.1G058600_v2.0.a1 Prupe.1G058900_v2.0.a1 Prupe.1G059000_v2.0.a1 Prupe.1G059100_v2.0.a1 Prupe.1G059200_v2.0.a1 Prupe.1G059300_v2.0.a1 Prupe.1G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396861 RchiOBHm_Chr7g0215481
rosa_laevigata	RLG00000002658 RLG00000009499
rosa_roxburghii	Rroxscaffold_4G00287630 Rroxscaffold_5G00341710
rosa_rugosa	Rorug01G0238300 Rorug03G0347100 Rorug07G0154000
rosa_samantha	Rh4DG068100 Rh7AG290200 Rh7BG282200 Rh7CG310200 Rh7DG294000
rosa_wichuraiana	Rw7G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	257
AciI	CCGC	2 cut(s)	255, 537
AcsI	RAATTY	2 cut(s)	316, 451
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	3 cut(s)	142, 362, 595
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	4 cut(s)	103, 158, 511, 602
AjnI	CCWGG	2 cut(s)	208, 363
AluBI	AGCT	2 cut(s)	345, 514
AluI	AGCT	2 cut(s)	345, 514
Alw26I	GTCTC	1 cut(s)	478
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	2 cut(s)	316, 451
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	323
AxyI	CCTNAGG	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	531
BciT130I	CCWGG	2 cut(s)	210, 365
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	478
BfmI	CTRYAG	1 cut(s)	579
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	1 cut(s)	520
BlpI	GCTNAGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	521
Bme1390I	CCNGG	3 cut(s)	210, 365, 502
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	325, 436
BmrFI	CCNGG	3 cut(s)	210, 365, 502
BmsI	GCATC	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	502
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	302
BsaJI	CCNNGG	6 cut(s)	90, 208, 209, 364, 456, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse21I	CCTNAGG	1 cut(s)	396
Bse3DI	GCAATG	1 cut(s)	461
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	2 cut(s)	210, 365
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	6 cut(s)	90, 208, 209, 364, 456, 501
BseGI	GGATG	1 cut(s)	375
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	107, 110
BseXI	GCAGC	1 cut(s)	531
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	401
BshFI	GGCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	50, 58
Bsp1720I	GCTNAGC	1 cut(s)	515
BspACI	CCGC	2 cut(s)	255, 537
BspANI	GGCC	1 cut(s)	23
BspDI	ATCGAT	1 cut(s)	231
BspHI	TCATGA	2 cut(s)	168, 192
BspLI	GGNNCC	2 cut(s)	325, 436
BspMAI	CTGCAG	1 cut(s)	583
BspMI	ACCTGC	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	276
BsrBI	CCGCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	461
BssECI	CCNNGG	6 cut(s)	90, 208, 209, 364, 456, 501
BssMI	GATC	2 cut(s)	50, 58
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	210, 365
Bst4CI	ACNGT	3 cut(s)	190, 341, 442
Bst6I	CTCTTC	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	3 cut(s)	6, 396, 515
BstF5I	GGATG	1 cut(s)	375
BstKTI	GATC	2 cut(s)	53, 61
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	2 cut(s)	50, 58
BstNI	CCWGG	2 cut(s)	210, 365
BstSCI	CCNGG	3 cut(s)	208, 363, 500
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	531
Bsu15I	ATCGAT	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	2 cut(s)	168, 192
Cfr13I	GGNCC	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	141, 361, 594
CviAII	CATG	2 cut(s)	169, 193
CviQI	GTAC	3 cut(s)	141, 361, 594
DdeI	CTNAG	3 cut(s)	6, 396, 515
DpnI	GATC	2 cut(s)	52, 60
DpnII	GATC	2 cut(s)	50, 58
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	208, 363
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	2 cut(s)	172, 196
FaiI	YATR	7 cut(s)	131, 135, 164, 170, 194, 336, 348
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	2 cut(s)	168, 192
FauI	CCCGC	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	520
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	520
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	501
Hin1II	CATG	2 cut(s)	172, 196
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	5 cut(s)	65, 303, 445, 471, 497
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	91, 450
Hpy188III	TCNNGA	5 cut(s)	62, 169, 193, 307, 559
HpyAV	CCTTC	3 cut(s)	91, 111, 295
HpyCH4III	ACNGT	3 cut(s)	190, 341, 442
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	3 cut(s)	382, 581, 642
HpyF3I	CTNAG	3 cut(s)	6, 396, 515
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	172, 196
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	50, 58
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	1 cut(s)	38
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	2 cut(s)	349, 385
MalI	GATC	2 cut(s)	52, 60
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	2 cut(s)	50, 58
MboII	GAAGA	4 cut(s)	124, 577, 580, 583
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	7 cut(s)	247, 316, 390, 429, 451, 589, 607
MlyI	GAGTC	1 cut(s)	480
MnlI	CCTC	5 cut(s)	85, 88, 254, 280, 615
MseI	TTAA	2 cut(s)	201, 606
MslI	CAYNNNNRTG	3 cut(s)	167, 191, 637
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	210, 365, 502
Mva1269I	GAATGC	1 cut(s)	644
MvaI	CCWGG	2 cut(s)	210, 365
NciI	CCSGG	1 cut(s)	502
NdeII	GATC	2 cut(s)	50, 58
NlaIII	CATG	2 cut(s)	172, 196
NlaIV	GGNNCC	2 cut(s)	325, 436
NmeAIII	GCCGAG	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	276
PagI	TCATGA	2 cut(s)	168, 192
PasI	CCCWGGG	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	23
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	4 cut(s)	65, 303, 445, 497
PkrI	GCNGC	1 cut(s)	521
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp6I	CCWGG	2 cut(s)	208, 363
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	208, 363
PspN4I	GGNNCC	2 cut(s)	325, 436
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	583
RsaI	GTAC	3 cut(s)	142, 362, 595
RsaNI	GTAC	3 cut(s)	141, 361, 594
RseI	CAYNNNNRTG	3 cut(s)	167, 191, 637
SaqAI	TTAA	2 cut(s)	201, 606
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	2 cut(s)	50, 58
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	3 cut(s)	210, 365, 502
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	8 cut(s)	83, 176, 246, 287, 347, 356, 387, 516
SfaNI	GCATC	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	579
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	3 cut(s)	167, 191, 637
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	7 cut(s)	247, 316, 390, 429, 451, 589, 607
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	255, 537
StuI	AGGCCT	1 cut(s)	23
StyD4I	CCNGG	3 cut(s)	208, 363, 500
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	3 cut(s)	190, 341, 442
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	2 cut(s)	231, 276
TasI	AATT	7 cut(s)	247, 316, 390, 429, 451, 589, 607
TfiI	GAWTC	4 cut(s)	65, 303, 445, 497
Tru1I	TTAA	2 cut(s)	201, 606
Tru9I	TTAA	2 cut(s)	201, 606
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	3 cut(s)	209, 578, 602
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	2 cut(s)	316, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.