RLG00000009499

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004892
Physical Location & Seq
Reverse (-)
53632161 .. 53632581
421 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009499

Sequence Viewer

Length: 339 bp
ATGAGTCCTTTCCTGAGAAATGCCCTTCCTCTCTTGGTCCTTTTTGTTGTGGTTCTTTCGATTACAACTAGTACTGATTCAGGATTTTCATGGCCAAAGCATAGAAGGGTTAGGATCAAAAATTTACTGGAAAACACTACTGAAATCTTGAGAGTCCATTGCAAATCTAAAGACGATGACATTGATTTGAATTCGAGGGTCAAGCTCGTTACTTTGACATTTTTAGAAATAGCAGAGACGATTGCAAGAACTGCTTCTGGGATATCATTGAGGGAGGCCCTTGTTTTTGGGGACTTGATGGTAATTGCTTCCAGTGGAACAAAAACTGATGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

113

Amino Acids

12.49

Weight (kDa)

8.98

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 2 cut(s) 121, 190
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 1 cut(s) 190
AhlI ACTAGT 1 cut(s) 68
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 122
AoxI GGCC 2 cut(s) 92, 276
ApoI RAATTY 2 cut(s) 121, 190
Asp700I GAANNNNTTC 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 37, 277
AvaII GGWCC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 94
BccI CCATC 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 230
BcuI ACTAGT 1 cut(s) 68
BfaI CTAG 1 cut(s) 69
BmcAI AGTACT 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 277
BmsI GCATC 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 132, 312
Bse3DI GCAATG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 2 cut(s) 132, 312
BshFI GGCC 2 cut(s) 94, 278
BslFI GGGAC 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 230
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 2 cut(s) 94, 278
Bsp143I GATC 1 cut(s) 114
BspANI GGCC 2 cut(s) 94, 278
BspCNI CTCAG 1 cut(s) 6
BspPI GGATC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 2 cut(s) 132, 312
BssMI GATC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 14
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 251
BsuRI GGCC 2 cut(s) 94, 278
BtsIMutI CAGTG 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 37, 277
Csp6I GTAC 1 cut(s) 72
CviAII CATG 2 cut(s) 90, 333
CviJI RGCY 3 cut(s) 94, 205, 278
CviKI_1 RGCY 3 cut(s) 94, 205, 278
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 92
Eco32I GATATC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 277
EcoRI GAATTC 1 cut(s) 190
EcoRV GATATC 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 2 cut(s) 93, 336
FaiI YATR 3 cut(s) 91, 102, 334
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 89, 332
FspBI CTAG 1 cut(s) 69
HaeIII GGCC 2 cut(s) 94, 278
Hin1II CATG 2 cut(s) 93, 336
HinfI GANTC 3 cut(s) 4, 77, 153
Hpy188III TCNNGA 3 cut(s) 13, 81, 148
HpyAV CCTTC 2 cut(s) 35, 99
HpyCH4V TGCA 3 cut(s) 162, 245, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 2 cut(s) 93, 336
Kzo9I GATC 1 cut(s) 114
LpnPI CCDG 5 cut(s) 26, 66, 113, 243, 325
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 94
MluCI AATT 3 cut(s) 121, 190, 303
MluNI TGGCCA 1 cut(s) 94
MlyI GAGTC 2 cut(s) 13, 162
MnlI CCTC 4 cut(s) 39, 189, 264, 268
Mox20I TGGCCA 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 253
MscI TGGCCA 1 cut(s) 94
Msp20I TGGCCA 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 1 cut(s) 114
NlaIII CATG 2 cut(s) 93, 336
NsiI ATGCAT 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 77
PleI GAGTC 2 cut(s) 12, 161
PpsI GAGTC 2 cut(s) 12, 161
PspPI GGNCC 2 cut(s) 37, 277
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 2 cut(s) 37, 277
ScaI AGTACT 1 cut(s) 73
SchI GAGTC 2 cut(s) 13, 162
SetI ASST 1 cut(s) 207
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SpeI ACTAGT 1 cut(s) 68
Sse9I AATT 3 cut(s) 121, 190, 303
SspMI CTAG 1 cut(s) 69
TaqI TCGA 2 cut(s) 59, 194
TasI AATT 3 cut(s) 121, 190, 303
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 1 cut(s) 77
TscAI CASTG 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 2 cut(s) 121, 190
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 73
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.