MD05G1264900.v1.1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0004892
Physical Location & Seq
Forward (+)
39990292 .. 39990723
432 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1264900.v1.1.491

Sequence Viewer

Length: 432 bp
ATGAGAAAAATGAGTCCCTTCCCAAGAAATGTGATTCTCCTTGTGTTGGTGCTAGTTATTACTTTAAAAACCACCAATGCTGCATATAGCGTTGATAATGACATCTTTCGCACCAGGCACATAAAGGTTACTATCATTAACACCCTGGAGTCAGCCGTGGACTTGAAGGTTCATTGTAAATCCAAAAACGATGATCTCGGCAAACATGTGATTCATCCGAACGAAAGCTACGATTTTGAGTTCGGAGTAAAGATTTTTTGGAGGAAAACACTGTTCTTTTGCGGCTTCACATGGTCGGATCAATTTAGGTGGTTTGATATATACAAGCAAGACAGGGATACTTGTAAGAATTGCATTTGGAGAGTACGTCAAAAGGGCCTTTGTTTGAAAGGCGGCCCGTGTTATCCATGGAACAAAGATCTTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

144

Amino Acids

16.85

Weight (kDa)

9.41

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 42 - 129 4.7e-27 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 282, 393
AclWI GGATC 1 cut(s) 306
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 46
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 2 cut(s) 166, 388
AjnI CCWGG 2 cut(s) 113, 144
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
AlwI GGATC 1 cut(s) 306
AoxI GGCC 2 cut(s) 376, 394
ApeKI GCWGC 2 cut(s) 80, 425
AspS9I GGNCC 2 cut(s) 376, 395
BbvI GCAGC 2 cut(s) 67, 412
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 2 cut(s) 115, 146
BciVI GTATCC 1 cut(s) 331
BfaI CTAG 1 cut(s) 53
BfuI GTATCC 1 cut(s) 331
BglII AGATCT 1 cut(s) 418
BisI GCNGC 4 cut(s) 81, 283, 394, 426
BlsI GCNGC 4 cut(s) 82, 284, 395, 427
Bme1390I CCNGG 2 cut(s) 115, 146
BmgT120I GGNCC 2 cut(s) 376, 395
BmrFI CCNGG 2 cut(s) 115, 146
BpmI CTGGAG 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 144, 156, 407
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseBI CCWGG 2 cut(s) 115, 146
BseDI CCNNGG 3 cut(s) 144, 156, 407
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 67, 412
BshFI GGCC 2 cut(s) 378, 396
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 2 cut(s) 378, 396
Bsp143I GATC 3 cut(s) 193, 298, 418
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 2 cut(s) 282, 393
BspANI GGCC 2 cut(s) 378, 396
BspPI GGATC 1 cut(s) 306
BssECI CCNNGG 3 cut(s) 144, 156, 407
BssMI GATC 3 cut(s) 193, 298, 418
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 2 cut(s) 115, 146
Bst4CI ACNGT 1 cut(s) 273
BstDSI CCRYGG 2 cut(s) 156, 407
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 3 cut(s) 196, 301, 421
BstMBI GATC 3 cut(s) 193, 298, 418
BstNI CCWGG 2 cut(s) 115, 146
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 113, 144
BstV1I GCAGC 2 cut(s) 67, 412
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 2 cut(s) 378, 396
BtgI CCRYGG 2 cut(s) 156, 407
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 376, 395
Csp6I GTAC 1 cut(s) 365
CspCI CAANNNNNGTGG 2 cut(s) 290, 325
CviAII CATG 3 cut(s) 206, 291, 408
CviJI RGCY 5 cut(s) 155, 228, 285, 378, 396
CviKI_1 RGCY 5 cut(s) 155, 228, 285, 378, 396
CviQI GTAC 1 cut(s) 365
DpnI GATC 3 cut(s) 195, 300, 420
DpnII GATC 3 cut(s) 193, 298, 418
DraI TTTAAA 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 2 cut(s) 113, 144
EcoT14I CCWWGG 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 3 cut(s) 209, 294, 411
FaiI YATR 8 cut(s) 85, 87, 122, 207, 292, 320, 322, 409
FatI CATG 3 cut(s) 205, 290, 407
Fnu4HI GCNGC 4 cut(s) 81, 283, 394, 426
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 4 cut(s) 81, 283, 394, 426
FspBI CTAG 1 cut(s) 53
GluI GCNGC 4 cut(s) 81, 283, 394, 426
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 2 cut(s) 378, 396
Hin1II CATG 3 cut(s) 209, 294, 411
HinfI GANTC 4 cut(s) 13, 34, 149, 211
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 219, 245, 298
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 28, 160
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 2 cut(s) 83, 354
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 3 cut(s) 209, 294, 411
Kzo9I GATC 3 cut(s) 193, 298, 418
LpnPI CCDG 5 cut(s) 100, 127, 131, 158, 319
Lsp1109I GCAGC 2 cut(s) 67, 412
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 1 cut(s) 127
MalI GATC 3 cut(s) 195, 300, 420
MboI GATC 3 cut(s) 193, 298, 418
MflI RGATCY 1 cut(s) 418
MluCI AATT 2 cut(s) 302, 349
MlyI GAGTC 2 cut(s) 22, 158
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 1 cut(s) 255
MseI TTAA 2 cut(s) 65, 138
MspR9I CCNGG 2 cut(s) 115, 146
MvaI CCWGG 2 cut(s) 115, 146
NcoI CCATGG 1 cut(s) 407
NdeII GATC 3 cut(s) 193, 298, 418
NlaIII CATG 3 cut(s) 209, 294, 411
NmeAIII GCCGAG 1 cut(s) 177
NspI RCATGY 1 cut(s) 209
PciI ACATGT 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 2 cut(s) 34, 211
PkrI GCNGC 4 cut(s) 82, 284, 395, 427
PleI GAGTC 2 cut(s) 21, 157
PpsI GAGTC 2 cut(s) 21, 157
PscI ACATGT 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 113, 144
PspGI CCWGG 2 cut(s) 113, 144
PspPI GGNCC 2 cut(s) 376, 395
PsrI GAACNNNNNNTAC 2 cut(s) 212, 244
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 65, 138
SatI GCNGC 4 cut(s) 81, 283, 394, 426
Sau3AI GATC 3 cut(s) 193, 298, 418
Sau96I GGNCC 2 cut(s) 376, 395
SchI GAGTC 2 cut(s) 22, 158
ScrFI CCNGG 2 cut(s) 115, 146
SetI ASST 5 cut(s) 129, 171, 230, 311, 370
Sse9I AATT 2 cut(s) 302, 349
SsiI CCGC 2 cut(s) 282, 393
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 113, 144
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 1 cut(s) 370
TasI AATT 2 cut(s) 302, 349
TauI GCSGC 2 cut(s) 285, 396
TfiI GAWTC 2 cut(s) 34, 211
Tru1I TTAA 2 cut(s) 65, 138
Tru9I TTAA 2 cut(s) 65, 138
TscAI CASTG 1 cut(s) 276
TseI GCWGC 2 cut(s) 80, 425
TspDTI ATGAA 2 cut(s) 161, 203
TspRI CASTG 1 cut(s) 276
XceI RCATGY 1 cut(s) 209
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.