Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004892

Physical Location & Seq

Genomic Coordinates Reverse (-)

34328486 .. 34330239

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0238300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGATGCTCGCACTATCGGAATATGGGGAATGGGTGGCATCGGAAAAACAACCATTGCTAGAGCTGTTTTATGACCAAATCTCTCATCAATTTGAACATTGTTGTTTTCTTGAAAATGTTAAGGAATATTGTTTCCTTACGAGGAATGGTGCACTAGAAATACAGGAAGAACTTATATCTAGAATCCTCAAGGAAAATTGGATTTCGGGTGCTTTAGATAGAGGTTCCAAGACAGTAATGGAAAAGCTAGGTAAGAAAAAAGTTCTTCTTGTTCTTGATGATGTGGACAACTTAGACCAAATTGACACCTTAATTGGGAAGAAGACTTCGTTTGGCGGTGGAAGTAGAATCATCATAACCACTAGAGATAAGCACTTACTAGGTAAAGTTGAGATATACGAGCCCAATGTATTAGGTGATGGTGAAGCTCTTGAACTCTTTAGACAGTATGCATTCAGGACAAACGAATCCTCGGCGGAGTATGATCATCTCTCAAGGTGTGCCATAAAATTTGCTCATGGTCTGCCTTTAGGACTTAAAGTTTTGGGATCCTTTCTTGATAACAAAAGTGCAAGTGAATGGGAAGATGAGTTGGAGAAAATAAAGAAAATTCCAAACCCGGGAATTCATAGTGTGCTCAAAACAAGCTTTGATAGACTAGATGATACACAGAAGAACATATTTCTAGATATAGCATGTTTCTTTAGAGGAAATGGCAAAGAATATGTTACAAAGATTATGGATAGTTTCGGGTTCTTTCCACATAGTGGACTAAGAGTTTTAGTTGATAGAGCTCTAGTTACCGTCTATCAAGGTGTTCAGATGCATGATTTGTTACAAGAAATGGGTAGAGATATTGTCCACCGAGAATCTCCTAAAGACCCTGGGAGGCTAGGTACAGAAGCAGTTGAATGCATAACCCTGGACTTGAAGAAGTCAAATGAGGCATATGTGAACACTGAAGGTTTTGTTAGCATGAAGAAACTAAGACTGCTCATGATTTATCCCGACAAGTGCAAAGATGCCTTCACACAAGTTATTGGGGACTTCAAGTATATTTTTCCCGAGTTGAGGTGTCTTATCTGGGATGGATGTCCTTCTAAATCTTTGCCATCTAATTTTGAACTAAAGAATCTTGTTCACCTTGACATGGTTGATAGTCACATTGAACAACTTTGGGAAGGACCACAGCCTTTCAGAAACTTAAAGCACATCAATTTAAGTTACTCTCAGTACCTTAAGAAAACCCCGGACTTCTCTGATGCACCAAATCTTGTGACAATATCTCTTGCGGGATGTAGAGGTTTATTGGAGGTTCACCCATCCATTTCAGCTCTTAAAAAACTTGTTTCCTTGACTCTGCAAGGGTGCAGCCAACTCAAAATTCTTCATTTAGAATTTCCTCTGGCTGAACCATATAAATTTCCTCATTCAAATCTCCATTTAGAAAAGCTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

486

Amino Acids

55.33

Weight (kDa)

6.09

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	25 - 155	4.3e-09	NB-ARC domain
WHD_ROQ1	PF23282	223 - 290	1.5e-20	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004892)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05610
malus_domestica	MD00G1101200.v1.1 MD05G1264800.v1.1 MD05G1264900.v1.1 MD13G1228100.v1.1 MD13G1228300.v1.1
prunus_persica	Prupe.1G057700_v2.0.a1 Prupe.1G057800_v2.0.a1 Prupe.1G058600_v2.0.a1 Prupe.1G058900_v2.0.a1 Prupe.1G059000_v2.0.a1 Prupe.1G059100_v2.0.a1 Prupe.1G059200_v2.0.a1 Prupe.1G059300_v2.0.a1 Prupe.1G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396861 RchiOBHm_Chr7g0215481
rosa_laevigata	RLG00000002658 RLG00000009499
rosa_roxburghii	Rroxscaffold_4G00287630 Rroxscaffold_5G00341710
rosa_rugosa	Rorug01G0238300 Rorug03G0347100 Rorug07G0154000
rosa_samantha	Rh4DG068100 Rh7AG290200 Rh7BG282200 Rh7CG310200 Rh7DG294000
rosa_wichuraiana	Rw7G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	767
AciI	CCGC	3 cut(s)	336, 476, 1292
AclWI	GGATC	2 cut(s)	543, 556
AcsI	RAATTY	6 cut(s)	509, 609, 624, 1383, 1397, 1421
AcuI	CTGAAG	1 cut(s)	981
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	2 cut(s)	898, 1235
AfiI	CCNNNNNNNGG	5 cut(s)	315, 620, 767, 1071, 1150
AflII	CTTAAG	1 cut(s)	1238
AgsI	TTSAA	9 cut(s)	95, 113, 434, 911, 931, 1051, 1124, 1169, 1434
AjnI	CCWGG	2 cut(s)	883, 921
AjuI	GAANNNNNNNTTGG	2 cut(s)	1368, 1400
AluBI	AGCT	7 cut(s)	64, 247, 428, 648, 794, 1334, 1453
AluI	AGCT	7 cut(s)	64, 247, 428, 648, 794, 1334, 1453
Alw21I	GWGCWC	3 cut(s)	154, 639, 796
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	543, 556
Ama87I	CYCGRG	2 cut(s)	619, 1064
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	1371
ApoI	RAATTY	6 cut(s)	509, 609, 624, 1383, 1397, 1421
AspS9I	GGNCC	1 cut(s)	1184
AsuC2I	CCSGG	3 cut(s)	620, 621, 1250
AsuHPI	GGTGA	4 cut(s)	428, 434, 1133, 1310
AvaI	CYCGRG	2 cut(s)	619, 1064
AvaII	GGWCC	1 cut(s)	1184
BaeGI	GKGCMC	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	548
BanII	GRGCYC	2 cut(s)	405, 796
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	3 cut(s)	154, 639, 796
BbvI	GCAGC	1 cut(s)	1383
BccI	CCATC	4 cut(s)	413, 1082, 1120, 1330
BciT130I	CCWGG	2 cut(s)	885, 923
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	3 cut(s)	620, 621, 1250
BfrI	CTTAAG	1 cut(s)	1238
BisI	GCNGC	1 cut(s)	1372
BlsI	GCNGC	1 cut(s)	1373
Bme1390I	CCNGG	5 cut(s)	620, 621, 885, 923, 1250
Bme18I	GGWCC	1 cut(s)	1184
BmeT110I	CYCGRG	2 cut(s)	619, 1064
BmgT120I	GGNCC	1 cut(s)	1184
BmiI	GGNNCC	2 cut(s)	226, 550
BmrFI	CCNGG	5 cut(s)	620, 621, 885, 923, 1250
BmsI	GCATC	4 cut(s)	47, 813, 1012, 1252
BpiI	GAAGAC	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	173, 478
BpuMI	CCSGG	3 cut(s)	620, 621, 1250
BsaJI	CCNNGG	6 cut(s)	471, 619, 883, 884, 921, 1248
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	5 cut(s)	315, 620, 767, 1071, 1150
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	885, 923
BseDI	CCNNGG	6 cut(s)	471, 619, 883, 884, 921, 1248
BseGI	GGATG	4 cut(s)	1093, 1097, 1301, 1322
BseLI	CCNNNNNNNGG	5 cut(s)	315, 620, 767, 1071, 1150
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	1244
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	1383
BsgI	GTGCAG	1 cut(s)	1390
BsiHKAI	GWGCWC	3 cut(s)	154, 639, 796
BsiHKCI	CYCGRG	2 cut(s)	619, 1064
BsiSI	CCGG	2 cut(s)	620, 1250
BslFI	GGGAC	1 cut(s)	1058
BslI	CCNNNNNNNGG	5 cut(s)	315, 620, 767, 1071, 1150
BsmFI	GGGAC	1 cut(s)	1058
BsmI	GAATGC	2 cut(s)	452, 917
BsoBI	CYCGRG	2 cut(s)	619, 1064
Bsp1286I	GDGCHC	4 cut(s)	154, 405, 639, 796
Bsp143I	GATC	2 cut(s)	484, 548
BspACI	CCGC	3 cut(s)	336, 476, 1292
BspCNI	CTCAG	1 cut(s)	1243
BspHI	TCATGA	1 cut(s)	996
BspLI	GGNNCC	2 cut(s)	226, 550
BspPI	GGATC	2 cut(s)	543, 556
BspTI	CTTAAG	1 cut(s)	1238
BsrDI	GCAATG	1 cut(s)	53
BssECI	CCNNGG	6 cut(s)	471, 619, 883, 884, 921, 1248
BssMI	GATC	2 cut(s)	484, 548
Bst2UI	CCWGG	2 cut(s)	885, 923
Bst4CI	ACNGT	3 cut(s)	235, 447, 805
BstAFI	CTTAAG	1 cut(s)	1238
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	4 cut(s)	292, 773, 986, 1230
BstF5I	GGATG	4 cut(s)	1093, 1097, 1301, 1322
BstKTI	GATC	2 cut(s)	487, 551
BstMBI	GATC	2 cut(s)	484, 548
BstNI	CCWGG	2 cut(s)	885, 923
BstNSI	RCATGY	1 cut(s)	699
BstSCI	CCNGG	5 cut(s)	618, 619, 883, 921, 1248
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	1383
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BtsCI	GGATG	4 cut(s)	1093, 1097, 1301, 1322
BtsIMutI	CAGTG	1 cut(s)	957
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	996
Cfr13I	GGNCC	1 cut(s)	1184
Cfr9I	CCCGGG	1 cut(s)	619
Csp6I	GTAC	2 cut(s)	897, 1234
CviAII	CATG	6 cut(s)	518, 696, 827, 976, 997, 1150
CviQI	GTAC	2 cut(s)	897, 1234
DdeI	CTNAG	4 cut(s)	292, 773, 986, 1230
DpnI	GATC	2 cut(s)	486, 550
DpnII	GATC	2 cut(s)	484, 548
DraIII	CACNNNGTG	1 cut(s)	767
EciI	GGCGGA	1 cut(s)	491
Ecl136II	GAGCTC	1 cut(s)	794
Eco24I	GRGCYC	2 cut(s)	405, 796
Eco47I	GGWCC	1 cut(s)	1184
Eco53kI	GAGCTC	1 cut(s)	794
Eco57I	CTGAAG	1 cut(s)	981
Eco88I	CYCGRG	2 cut(s)	619, 1064
EcoICRI	GAGCTC	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	624
EcoRII	CCWGG	2 cut(s)	883, 921
EcoT22I	ATGCAT	3 cut(s)	454, 828, 917
EcoT38I	GRGCYC	2 cut(s)	405, 796
FaeI	CATG	6 cut(s)	521, 699, 830, 979, 1000, 1153
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	1 cut(s)	1058
FatI	CATG	6 cut(s)	517, 695, 826, 975, 996, 1149
FauI	CCCGC	1 cut(s)	1285
FauNDI	CATATG	1 cut(s)	949
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	1372
FokI	GGATG	4 cut(s)	1100, 1104, 1308, 1309
FriOI	GRGCYC	2 cut(s)	405, 796
Fsp4HI	GCNGC	1 cut(s)	1372
GluI	GCNGC	1 cut(s)	1372
HapII	CCGG	2 cut(s)	620, 1250
Hin1II	CATG	6 cut(s)	521, 699, 830, 979, 1000, 1153
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	6 cut(s)	183, 348, 467, 869, 1132, 1357
HpaII	CCGG	2 cut(s)	620, 1250
HphI	GGTGA	4 cut(s)	428, 434, 1133, 1310
Hpy166II	GTNNAC	7 cut(s)	152, 286, 770, 862, 955, 1141, 1318
Hpy188I	TCNGA	5 cut(s)	19, 43, 822, 1199, 1261
Hpy8I	GTNNAC	7 cut(s)	152, 286, 770, 862, 955, 1141, 1318
HpyAV	CCTTC	4 cut(s)	956, 1036, 1107, 1175
HpyCH4III	ACNGT	3 cut(s)	235, 447, 805
HpyCH4V	TGCA	9 cut(s)	152, 452, 572, 826, 915, 1017, 1265, 1363, 1371
HpyF3I	CTNAG	4 cut(s)	292, 773, 986, 1230
Hsp92II	CATG	6 cut(s)	521, 699, 830, 979, 1000, 1153
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	484, 548
Lsp1109I	GCAGC	1 cut(s)	1383
LweI	GCATC	4 cut(s)	47, 813, 1012, 1252
MaeIII	GTNAC	6 cut(s)	727, 799, 834, 1160, 1223, 1276
MalI	GATC	2 cut(s)	486, 550
MboI	GATC	2 cut(s)	484, 548
MboII	GAAGA	9 cut(s)	179, 257, 331, 334, 596, 685, 943, 991, 1379
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	4 cut(s)	154, 405, 639, 796
MlyI	GAGTC	1 cut(s)	1351
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	3 cut(s)	454, 828, 917
MseI	TTAA	8 cut(s)	120, 311, 537, 1205, 1220, 1239, 1338, 1459
MspCI	CTTAAG	1 cut(s)	1238
MspI	CCGG	2 cut(s)	620, 1250
MspR9I	CCNGG	5 cut(s)	620, 621, 885, 923, 1250
Mva1269I	GAATGC	2 cut(s)	452, 917
MvaI	CCWGG	2 cut(s)	885, 923
NciI	CCSGG	3 cut(s)	620, 621, 1250
NdeI	CATATG	1 cut(s)	949
NdeII	GATC	2 cut(s)	484, 548
NlaIII	CATG	6 cut(s)	521, 699, 830, 979, 1000, 1153
NlaIV	GGNNCC	2 cut(s)	226, 550
NmeAIII	GCCGAG	1 cut(s)	452
NmuCI	GTSAC	2 cut(s)	1160, 1276
NsiI	ATGCAT	3 cut(s)	454, 828, 917
NspI	RCATGY	1 cut(s)	699
PagI	TCATGA	1 cut(s)	996
PasI	CCCWGGG	1 cut(s)	884
PctI	GAATGC	2 cut(s)	452, 917
PfeI	GAWTC	5 cut(s)	183, 348, 467, 869, 1132
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	1 cut(s)	1373
PleI	GAGTC	1 cut(s)	1351
PpsI	GAGTC	1 cut(s)	1351
Psp124BI	GAGCTC	1 cut(s)	796
Psp6I	CCWGG	2 cut(s)	883, 921
PspGI	CCWGG	2 cut(s)	883, 921
PspN4I	GGNNCC	2 cut(s)	226, 550
PspPI	GGNCC	1 cut(s)	1184
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	2 cut(s)	898, 1235
RsaNI	GTAC	2 cut(s)	897, 1234
SacI	GAGCTC	1 cut(s)	796
SaqAI	TTAA	8 cut(s)	120, 311, 537, 1205, 1220, 1239, 1338, 1459
SatI	GCNGC	1 cut(s)	1372
Sau3AI	GATC	2 cut(s)	484, 548
Sau96I	GGNCC	1 cut(s)	1184
SchI	GAGTC	1 cut(s)	1351
ScrFI	CCNGG	5 cut(s)	620, 621, 885, 923, 1250
SduI	GDGCHC	4 cut(s)	154, 405, 639, 796
SfaNI	GCATC	4 cut(s)	47, 813, 1012, 1252
SinI	GGWCC	1 cut(s)	1184
SmaI	CCCGGG	1 cut(s)	621
SmlI	CTYRAG	3 cut(s)	188, 493, 1238
SmoI	CTYRAG	3 cut(s)	188, 493, 1238
SsiI	CCGC	3 cut(s)	336, 476, 1292
SspI	AATATT	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	796
StyD4I	CCNGG	5 cut(s)	618, 619, 883, 921, 1248
TaaI	ACNGT	3 cut(s)	235, 447, 805
TfiI	GAWTC	5 cut(s)	183, 348, 467, 869, 1132
Tru1I	TTAA	8 cut(s)	120, 311, 537, 1205, 1220, 1239, 1338, 1459
Tru9I	TTAA	8 cut(s)	120, 311, 537, 1205, 1220, 1239, 1338, 1459
TscAI	CASTG	1 cut(s)	964
TseFI	GTSAC	2 cut(s)	1160, 1276
TseI	GCWGC	1 cut(s)	1371
Tsp45I	GTSAC	2 cut(s)	1160, 1276
TspDTI	ATGAA	3 cut(s)	617, 992, 1379
TspMI	CCCGGG	1 cut(s)	619
TspRI	CASTG	1 cut(s)	964
Van91I	CCANNNNNTGG	1 cut(s)	767
Vha464I	CTTAAG	1 cut(s)	1238
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	1184
XapI	RAATTY	6 cut(s)	509, 609, 624, 1383, 1397, 1421
XbaI	TCTAGA	2 cut(s)	179, 685
XceI	RCATGY	1 cut(s)	699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmaI	CCCGGG	1 cut(s)	619
Zsp2I	ATGCAT	3 cut(s)	454, 828, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.