Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004892

Physical Location & Seq

Genomic Coordinates Reverse (-)

4109801 .. 4110169

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G057800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCTGCTGCTACTAGTTGTTCATATGACAACACTAGTTGAGTCGTCTAACCCACCTAAAAAGATAACGGTTCGGATCACCAACACTTTGGAAGACAACCTGGACCTCACAGTCCATTGTAAATCCAAGGACGACGATCTTGGCGAGCACCTGCTGCATCCGGGGGAGACATATGAATTTAGTTTTGGACGAAACTTTTTTCAGTCGAGCACACTATTCTTCTGCGGATTCCGATGGCCTGGGGATCCCAAACTTCACTATTTTGACATCTACTCTCAAAAAAGGGATGAATGTAGCAAATGCTTTTGGACGGTTAAAAAAGTTGGCCCGTGTTTGTATGGTCAGTGCTTTTTGTGGCATGACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

123

Amino Acids

14.24

Weight (kDa)

6.27

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004892)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05610
malus_domestica	MD00G1101200.v1.1 MD05G1264800.v1.1 MD05G1264900.v1.1 MD13G1228100.v1.1 MD13G1228300.v1.1
prunus_persica	Prupe.1G057700_v2.0.a1 Prupe.1G057800_v2.0.a1 Prupe.1G058600_v2.0.a1 Prupe.1G058900_v2.0.a1 Prupe.1G059000_v2.0.a1 Prupe.1G059100_v2.0.a1 Prupe.1G059200_v2.0.a1 Prupe.1G059300_v2.0.a1 Prupe.1G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396861 RchiOBHm_Chr7g0215481
rosa_laevigata	RLG00000002658 RLG00000009499
rosa_roxburghii	Rroxscaffold_4G00287630 Rroxscaffold_5G00341710
rosa_rugosa	Rorug01G0238300 Rorug03G0347100 Rorug07G0154000
rosa_samantha	Rh4DG068100 Rh7AG290200 Rh7BG282200 Rh7CG310200 Rh7DG294000
rosa_wichuraiana	Rw7G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	159
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	159
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	3 cut(s)	83, 239, 252
AcsI	RAATTY	1 cut(s)	176
AhlI	ACTAGT	2 cut(s)	13, 34
AjnI	CCWGG	2 cut(s)	99, 238
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
Alw21I	GWGCWC	2 cut(s)	150, 212
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	83, 239, 252
AoxI	GGCC	2 cut(s)	236, 325
ApeKI	GCWGC	3 cut(s)	4, 7, 154
ApoI	RAATTY	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	103, 326
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	103
BamHI	GGATCC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	150, 212
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	101, 240
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	2 cut(s)	13, 34
BfaI	CTAG	2 cut(s)	14, 35
BfuAI	ACCTGC	1 cut(s)	159
BisI	GCNGC	3 cut(s)	5, 8, 155
BlsI	GCNGC	3 cut(s)	6, 9, 156
Bme1390I	CCNGG	3 cut(s)	101, 162, 240
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 326
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	3 cut(s)	101, 162, 240
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	126, 161, 239
BseBI	CCWGG	2 cut(s)	101, 240
BseDI	CCNNGG	3 cut(s)	126, 161, 239
BseGI	GGATG	2 cut(s)	157, 292
BseXI	GCAGC	1 cut(s)	141
BshFI	GGCC	2 cut(s)	238, 327
BsiHKAI	GWGCWC	2 cut(s)	150, 212
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	238, 327
Bsp1286I	GDGCHC	2 cut(s)	150, 212
Bsp143I	GATC	3 cut(s)	75, 136, 244
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	238, 327
BspLI	GGNNCC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	83, 239, 252
BssECI	CCNNGG	3 cut(s)	126, 161, 239
BssMI	GATC	3 cut(s)	75, 136, 244
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	101, 240
Bst4CI	ACNGT	3 cut(s)	70, 112, 313
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	157, 292
BstKTI	GATC	3 cut(s)	78, 139, 247
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	3 cut(s)	75, 136, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	2 cut(s)	101, 240
BstSCI	CCNGG	3 cut(s)	99, 160, 238
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	238, 327
BtsCI	GGATG	2 cut(s)	157, 292
BtsIMutI	CAGTG	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	103, 326
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	2 cut(s)	238, 327
CviKI_1	RGCY	2 cut(s)	238, 327
DpnI	GATC	3 cut(s)	77, 138, 246
DpnII	GATC	3 cut(s)	75, 136, 244
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	99, 238
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	362
FaiI	YATR	7 cut(s)	24, 26, 172, 174, 339, 360, 367
FatI	CATG	1 cut(s)	358
FauNDI	CATATG	2 cut(s)	24, 172
Fnu4HI	GCNGC	3 cut(s)	5, 8, 155
FokI	GGATG	2 cut(s)	144, 299
Fsp4HI	GCNGC	3 cut(s)	5, 8, 155
FspBI	CTAG	2 cut(s)	14, 35
GluI	GCNGC	3 cut(s)	5, 8, 155
HaeIII	GGCC	2 cut(s)	238, 327
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	3 cut(s)	41, 228, 362
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	75, 233
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	3 cut(s)	70, 112, 313
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	75, 136, 244
LpnPI	CCDG	6 cut(s)	86, 113, 164, 174, 225, 252
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	14, 35
MalI	GATC	3 cut(s)	77, 138, 246
MboI	GATC	3 cut(s)	75, 136, 244
MboII	GAAGA	2 cut(s)	104, 211
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	150, 212
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	50, 356
MnlI	CCTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	315
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	3 cut(s)	101, 162, 240
MvaI	CCWGG	2 cut(s)	101, 240
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	162
NdeI	CATATG	2 cut(s)	24, 172
NdeII	GATC	3 cut(s)	75, 136, 244
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	246
PaqCI	CACCTGC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	6, 9, 156
PleI	GAGTC	2 cut(s)	49, 356
PpsI	GAGTC	2 cut(s)	49, 356
Psp6I	CCWGG	2 cut(s)	99, 238
PspGI	CCWGG	2 cut(s)	99, 238
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	103, 326
PsuI	RGATCY	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	5, 8, 155
Sau3AI	GATC	3 cut(s)	75, 136, 244
Sau96I	GGNCC	2 cut(s)	103, 326
SchI	GAGTC	2 cut(s)	50, 356
ScrFI	CCNGG	3 cut(s)	101, 162, 240
SduI	GDGCHC	2 cut(s)	150, 212
SetI	ASST	4 cut(s)	58, 102, 108, 153
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	103
SpeI	ACTAGT	2 cut(s)	13, 34
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	14, 35
StyD4I	CCNGG	3 cut(s)	99, 160, 238
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	3 cut(s)	70, 112, 313
TaqI	TCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	3 cut(s)	4, 7, 154
TspDTI	ATGAA	3 cut(s)	11, 189, 303
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	176
XspI	CTAG	2 cut(s)	14, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.