Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004892

Physical Location & Seq

Genomic Coordinates Forward (+)

4180940 .. 4181357

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCCCTCCTATCAGAAATGTTGTTATGGCACTGCTAGTTGTGCTTTTAATTACAAGTACTGAGGCCGATGTTCAAATTCCTAGGACCAAAAGAGTCAGAATCACCAACTCGTTGGCAAGCCTCGTGGACATGAAGGTCCACTGTAAATCCGGTGCGCATGACCTAGGGGAGCAGATAGTTCGTCCAACGGAGAGCTATGAGTTCCGTTTCAAAACAAATTTTCTGGGAACCACATTATTCTTCTGCAGCTTTCAGTGGGGGAATGAGTTTCATTATTTCGATGTTTACAAGAACGGTAGGGACGATTGTAGCAAATGCTTTTGGACTATTGTTGAAAACGGACCTTGCTTGTATGGCGTTCAGGGTGTCTGCCATCAGTGGAACAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

132

Amino Acids

15.06

Weight (kDa)

8.24

Isoelectric Point (pI)

21.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004892)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05610
malus_domestica	MD00G1101200.v1.1 MD05G1264800.v1.1 MD05G1264900.v1.1 MD13G1228100.v1.1 MD13G1228300.v1.1
prunus_persica	Prupe.1G057700_v2.0.a1 Prupe.1G057800_v2.0.a1 Prupe.1G058600_v2.0.a1 Prupe.1G058900_v2.0.a1 Prupe.1G059000_v2.0.a1 Prupe.1G059100_v2.0.a1 Prupe.1G059200_v2.0.a1 Prupe.1G059300_v2.0.a1 Prupe.1G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396861 RchiOBHm_Chr7g0215481
rosa_laevigata	RLG00000002658 RLG00000009499
rosa_roxburghii	Rroxscaffold_4G00287630 Rroxscaffold_5G00341710
rosa_rugosa	Rorug01G0238300 Rorug03G0347100 Rorug07G0154000
rosa_samantha	Rh4DG068100 Rh7AG290200 Rh7BG282200 Rh7CG310200 Rh7DG294000
rosa_wichuraiana	Rw7G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
Acc16I	TGCGCA	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	78, 220
AfaI	GTAC	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	77, 214, 338
AluBI	AGCT	2 cut(s)	198, 252
AluI	AGCT	2 cut(s)	198, 252
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	249
ApoI	RAATTY	2 cut(s)	78, 220
AspA2I	CCTAGG	2 cut(s)	83, 166
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	3 cut(s)	87, 139, 344
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	3 cut(s)	87, 139, 344
AvrII	CCTAGG	2 cut(s)	83, 166
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	384
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BfaI	CTAG	3 cut(s)	38, 84, 167
BfmI	CTRYAG	1 cut(s)	247
BisI	GCNGC	1 cut(s)	250
BlnI	CCTAGG	2 cut(s)	83, 166
BlsI	GCNGC	1 cut(s)	251
BmcAI	AGTACT	1 cut(s)	61
Bme18I	GGWCC	3 cut(s)	87, 139, 344
BmgT120I	GGNCC	3 cut(s)	87, 139, 344
BmiI	GGNNCC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	83, 166
BsaWI	WCCGGW	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	83, 166
BseMII	CTCAG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	261
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	83, 166
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	2 cut(s)	83, 166
Bst2BI	CACGAG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	146, 299
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 357
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	4 cut(s)	32, 142, 263, 386
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	3 cut(s)	87, 139, 344
Csp6I	GTAC	1 cut(s)	60
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	2 cut(s)	133, 161
CviJI	RGCY	5 cut(s)	6, 68, 123, 198, 252
CviKI_1	RGCY	5 cut(s)	6, 68, 123, 198, 252
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	63
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	83, 166
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	87, 139, 344
EcoT14I	CCWWGG	2 cut(s)	83, 166
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	83, 166
FaeI	CATG	2 cut(s)	136, 164
FaiI	YATR	5 cut(s)	29, 134, 162, 201, 357
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	132, 160
Fnu4HI	GCNGC	1 cut(s)	250
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	250
FspAI	RTGCGCAY	1 cut(s)	159
FspBI	CTAG	3 cut(s)	38, 84, 167
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	136, 164
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	96, 102
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	3 cut(s)	130, 142, 289
Hpy188I	TCNGA	2 cut(s)	17, 101
Hpy8I	GTNNAC	3 cut(s)	130, 142, 289
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	146, 299
HpyCH4V	TGCA	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 357
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	136, 164
HspAI	GCGC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	3 cut(s)	166, 212, 350
Lsp1109I	GCAGC	1 cut(s)	261
MaeI	CTAG	3 cut(s)	38, 84, 167
MboII	GAAGA	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	51, 78, 220, 391
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	3 cut(s)	18, 58, 134
MseI	TTAA	1 cut(s)	50
MspI	CCGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	43, 357
NlaIII	CATG	2 cut(s)	136, 164
NlaIV	GGNNCC	1 cut(s)	232
NsbI	TGCGCA	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	87, 139, 344
PstI	CTGCAG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	250
Sau96I	GGNCC	3 cut(s)	87, 139, 344
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	141, 168, 200, 254, 349
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	3 cut(s)	87, 139, 344
Sse9I	AATT	4 cut(s)	51, 78, 220, 391
SspMI	CTAG	3 cut(s)	38, 84, 167
StyI	CCWWGG	2 cut(s)	83, 166
TaaI	ACNGT	2 cut(s)	146, 299
TaqI	TCGA	1 cut(s)	282
TasI	AATT	4 cut(s)	51, 78, 220, 391
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	4 cut(s)	39, 149, 263, 386
TseI	GCWGC	1 cut(s)	249
TspDTI	ATGAA	2 cut(s)	149, 263
TspGWI	ACGGA	3 cut(s)	197, 206, 357
TspRI	CASTG	4 cut(s)	39, 149, 263, 386
VpaK11BI	GGWCC	3 cut(s)	87, 139, 344
XapI	RAATTY	2 cut(s)	78, 220
XmaJI	CCTAGG	2 cut(s)	83, 166
XspI	CTAG	3 cut(s)	38, 84, 167
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.