Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004892

Physical Location & Seq

Genomic Coordinates Reverse (-)

4232627 .. 4233199

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G059800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCACTGCTAGTTGTGCTTTTAATTACAAGTACTGAGGCCGACGTTCAAATTCCTAGGACCAAAAGACTCAGAATCACCAACTCGTTGGCAAGTAAAGTGGACATGAAGGTCCACTGTAAATCCGGTGCGCATGACCTAGGGGAGCAGATAGTTCGTCCAACGGAGAGCTATGAGTTCCGTTTCAAAACAAATGTTATGGGAACCTCATTGTTCTTCTGCAGCTTTCAGTGGGGGAATGAGTTTCATCATTTCGATGTTTACAAGAACGGTAGGGACGATTGTCTTACTCATGATGCCTTGTGTGGTTGGAAATTCTGCCGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

110

Amino Acids

12.57

Weight (kDa)

8.33

Isoelectric Point (pI)

10.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004892)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05610
malus_domestica	MD00G1101200.v1.1 MD05G1264800.v1.1 MD05G1264900.v1.1 MD13G1228100.v1.1 MD13G1228300.v1.1
prunus_persica	Prupe.1G057700_v2.0.a1 Prupe.1G057800_v2.0.a1 Prupe.1G058600_v2.0.a1 Prupe.1G058900_v2.0.a1 Prupe.1G059000_v2.0.a1 Prupe.1G059100_v2.0.a1 Prupe.1G059200_v2.0.a1 Prupe.1G059300_v2.0.a1 Prupe.1G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396861 RchiOBHm_Chr7g0215481
rosa_laevigata	RLG00000002658 RLG00000009499
rosa_roxburghii	Rroxscaffold_4G00287630 Rroxscaffold_5G00341710
rosa_rugosa	Rorug01G0238300 Rorug03G0347100 Rorug07G0154000
rosa_samantha	Rh4DG068100 Rh7AG290200 Rh7BG282200 Rh7CG310200 Rh7DG294000
rosa_wichuraiana	Rw7G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc16I	TGCGCA	1 cut(s)	132
AcsI	RAATTY	2 cut(s)	51, 314
AfaI	GTAC	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	50, 187
AluBI	AGCT	2 cut(s)	171, 225
AluI	AGCT	2 cut(s)	171, 225
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	2 cut(s)	51, 314
AspA2I	CCTAGG	2 cut(s)	56, 139
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	60, 112
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	60, 112
AvrII	CCTAGG	2 cut(s)	56, 139
BbvI	GCAGC	1 cut(s)	234
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BfaI	CTAG	3 cut(s)	11, 57, 140
BfmI	CTRYAG	1 cut(s)	220
BisI	GCNGC	1 cut(s)	223
BlnI	CCTAGG	2 cut(s)	56, 139
BlsI	GCNGC	1 cut(s)	224
BmcAI	AGTACT	1 cut(s)	34
Bme18I	GGWCC	2 cut(s)	60, 112
BmgT120I	GGNCC	2 cut(s)	60, 112
BmiI	GGNNCC	1 cut(s)	205
BmsI	GCATC	1 cut(s)	286
BoxI	GACNNNNGTC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	56, 139
BsaWI	WCCGGW	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	56, 139
BseMII	CTCAG	2 cut(s)	27, 85
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	28, 84
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	56, 139
BssT1I	CCWWGG	2 cut(s)	56, 139
Bst4CI	ACNGT	2 cut(s)	119, 272
BstDEI	CTNAG	2 cut(s)	36, 71
BstHHI	GCGC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	3 cut(s)	5, 115, 236
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	60, 112
Csp6I	GTAC	1 cut(s)	33
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	3 cut(s)	106, 134, 293
CviJI	RGCY	3 cut(s)	41, 171, 225
CviKI_1	RGCY	3 cut(s)	41, 171, 225
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	36, 71
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eco130I	CCWWGG	2 cut(s)	56, 139
Eco47I	GGWCC	2 cut(s)	60, 112
EcoT14I	CCWWGG	2 cut(s)	56, 139
ErhI	CCWWGG	2 cut(s)	56, 139
FaeI	CATG	3 cut(s)	109, 137, 296
FaiI	YATR	5 cut(s)	107, 135, 174, 200, 294
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	3 cut(s)	105, 133, 292
Fnu4HI	GCNGC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	223
FspAI	RTGCGCAY	1 cut(s)	132
FspBI	CTAG	3 cut(s)	11, 57, 140
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	109, 137, 296
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	69, 75
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	3 cut(s)	103, 115, 262
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	3 cut(s)	103, 115, 262
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	119, 272
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	2 cut(s)	36, 71
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	109, 137, 296
HspAI	GCGC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	1 cut(s)	139
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	3 cut(s)	11, 57, 140
MaeII	ACGT	1 cut(s)	45
MboII	GAAGA	1 cut(s)	208
MluCI	AATT	3 cut(s)	24, 51, 314
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	185, 290
MnlI	CCTC	2 cut(s)	31, 217
MseI	TTAA	2 cut(s)	23, 328
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	16
NlaIII	CATG	3 cut(s)	109, 137, 296
NlaIV	GGNNCC	1 cut(s)	205
NsbI	TGCGCA	1 cut(s)	132
PagI	TCATGA	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PshAI	GACNNNNGTC	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	60, 112
PstI	CTGCAG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	23, 328
SatI	GCNGC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	60, 112
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	1 cut(s)	63
SetI	ASST	6 cut(s)	48, 114, 141, 173, 209, 227
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	220
SinI	GGWCC	2 cut(s)	60, 112
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	3 cut(s)	24, 51, 314
SspMI	CTAG	3 cut(s)	11, 57, 140
StyI	CCWWGG	2 cut(s)	56, 139
TaaI	ACNGT	2 cut(s)	119, 272
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	24, 51, 314
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	23, 328
Tru9I	TTAA	2 cut(s)	23, 328
TscAI	CASTG	3 cut(s)	12, 122, 236
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	122, 236
TspGWI	ACGGA	2 cut(s)	170, 179
TspRI	CASTG	3 cut(s)	12, 122, 236
VpaK11BI	GGWCC	2 cut(s)	60, 112
XapI	RAATTY	2 cut(s)	51, 314
XmaJI	CCTAGG	2 cut(s)	56, 139
XspI	CTAG	3 cut(s)	11, 57, 140
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.