Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004892

Physical Location & Seq

Genomic Coordinates Forward (+)

4185567 .. 4186425

Gene Structure 859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCACTGCTAGTTGTGCTTTTAATTACAACTACTGAGGCCGACATTCAATTTCCTACGACCAAAACAGTCAGACTCACCAACTCGTTGGCAAGCTACGTGGACATGAAGGTCCACTGTAAATCCGGTGCGCATGACCTAGGGGAGCAGATAGTTCATCCAACGGAGAGCTATGAGTTCAGTTTCAAAACAAATTTTCTGGGAACCACATTATTCTTCTGCAGCTTTCAGTGGGGGAATGAGTTTCATTATTTCGATGTTTACAAGAACGGTAGGGACGAATGTAGCAAATGCTTTTGGACTATTGTTGAAGCCGGGCCTTGCTTTTCATACTTCAAAAGTTTCAATGCTAGACCCGAACTATCTCATGCTTTCACTGATGTGGATGCCAAATTTGCGCAACGCGGAAAAGAGGAAAAATGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

143

Amino Acids

16.34

Weight (kDa)

5.92

Isoelectric Point (pI)

9.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004892)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05610
malus_domestica	MD00G1101200.v1.1 MD05G1264800.v1.1 MD05G1264900.v1.1 MD13G1228100.v1.1 MD13G1228300.v1.1
prunus_persica	Prupe.1G057700_v2.0.a1 Prupe.1G057800_v2.0.a1 Prupe.1G058600_v2.0.a1 Prupe.1G058900_v2.0.a1 Prupe.1G059000_v2.0.a1 Prupe.1G059100_v2.0.a1 Prupe.1G059200_v2.0.a1 Prupe.1G059300_v2.0.a1 Prupe.1G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396861 RchiOBHm_Chr7g0215481
rosa_laevigata	RLG00000002658 RLG00000009499
rosa_roxburghii	Rroxscaffold_4G00287630 Rroxscaffold_5G00341710
rosa_rugosa	Rorug01G0238300 Rorug03G0347100 Rorug07G0154000
rosa_samantha	Rh4DG068100 Rh7AG290200 Rh7BG282200 Rh7CG310200 Rh7DG294000
rosa_wichuraiana	Rw7G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc16I	TGCGCA	2 cut(s)	132, 399
AccII	CGCG	1 cut(s)	405
AciI	CCGC	1 cut(s)	405
AcsI	RAATTY	2 cut(s)	193, 392
AgsI	TTSAA	5 cut(s)	50, 187, 311, 337, 346
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	3 cut(s)	96, 171, 225
AluI	AGCT	3 cut(s)	96, 171, 225
AoxI	GGCC	2 cut(s)	39, 317
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	2 cut(s)	193, 392
AspA2I	CCTAGG	1 cut(s)	139
AspLEI	GCGC	2 cut(s)	133, 400
AspS9I	GGNCC	2 cut(s)	112, 317
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	112
AvrII	CCTAGG	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	316
BfaI	CTAG	3 cut(s)	11, 140, 351
BfmI	CTRYAG	1 cut(s)	220
BisI	GCNGC	1 cut(s)	223
BlnI	CCTAGG	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	112, 317
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	157, 391
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	41, 319
BsiSI	CCGG	2 cut(s)	126, 315
BslFI	GGGAC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	41, 319
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	2 cut(s)	41, 319
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	139
Bst4CI	ACNGT	3 cut(s)	70, 119, 272
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	157, 391
BstFNI	CGCG	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	133, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 395
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	41, 319
BtsCI	GGATG	2 cut(s)	157, 391
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	4 cut(s)	5, 115, 236, 375
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	2 cut(s)	133, 400
Cfr13I	GGNCC	2 cut(s)	112, 317
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	3 cut(s)	106, 134, 368
CviJI	RGCY	6 cut(s)	41, 96, 171, 225, 314, 319
CviKI_1	RGCY	6 cut(s)	41, 96, 171, 225, 314, 319
DdeI	CTNAG	1 cut(s)	36
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	3 cut(s)	109, 137, 371
FaiI	YATR	5 cut(s)	107, 135, 174, 331, 369
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	3 cut(s)	105, 133, 367
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	2 cut(s)	144, 398
Fsp4HI	GCNGC	1 cut(s)	223
FspAI	RTGCGCAY	1 cut(s)	132
FspBI	CTAG	3 cut(s)	11, 140, 351
FspI	TGCGCA	2 cut(s)	132, 399
GlaI	GCGC	2 cut(s)	132, 399
GluI	GCNGC	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	41, 319
HapII	CCGG	2 cut(s)	126, 315
HhaI	GCGC	2 cut(s)	133, 400
Hin1II	CATG	3 cut(s)	109, 137, 371
Hin6I	GCGC	2 cut(s)	131, 398
HinP1I	GCGC	2 cut(s)	131, 398
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	126, 315
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	3 cut(s)	103, 115, 262
Hpy188I	TCNGA	1 cut(s)	74
Hpy8I	GTNNAC	3 cut(s)	103, 115, 262
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	3 cut(s)	70, 119, 272
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 395
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	109, 137, 371
HspAI	GCGC	2 cut(s)	131, 398
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	139, 185, 328
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	3 cut(s)	11, 140, 351
MaeII	ACGT	1 cut(s)	99
MboII	GAAGA	1 cut(s)	208
MluCI	AATT	4 cut(s)	24, 50, 193, 392
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	2 cut(s)	31, 406
MseI	TTAA	2 cut(s)	23, 427
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	2 cut(s)	126, 315
MspR9I	CCNGG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	16, 395
NciI	CCSGG	1 cut(s)	316
NlaIII	CATG	3 cut(s)	109, 137, 371
NlaIV	GGNNCC	1 cut(s)	205
NsbI	TGCGCA	2 cut(s)	132, 399
OliI	CACNNNNGTG	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Ppu21I	YACGTR	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	112, 317
PstI	CTGCAG	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	23, 427
SatI	GCNGC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	112, 317
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	316
SetI	ASST	6 cut(s)	98, 102, 114, 141, 173, 227
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	220
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	4 cut(s)	24, 50, 193, 392
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	3 cut(s)	11, 140, 351
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	3 cut(s)	70, 119, 272
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	255
TasI	AATT	4 cut(s)	24, 50, 193, 392
Tru1I	TTAA	2 cut(s)	23, 427
Tru9I	TTAA	2 cut(s)	23, 427
TscAI	CASTG	4 cut(s)	12, 122, 236, 382
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	4 cut(s)	122, 146, 236, 318
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	4 cut(s)	12, 122, 236, 382
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	193, 392
XmaJI	CCTAGG	1 cut(s)	139
XspI	CTAG	3 cut(s)	11, 140, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.