Prupe.1G059300_v2.0.a1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004892
Physical Location & Seq
Forward (+)
4197724 .. 4198098
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G059300.1

Sequence Viewer

Length: 375 bp
ATGCCTTTGCTGGTAATTATTTTCATAACAACTTCTGTGGATGGTGCTCTCCTTGATGCTCCTAAGGACGTAGTCGTCAGAATCACCAACGCGTTACAAAACAACGTAAACTTGACGGTGCACTGCAAATCTGGCGACGACGACCTTGGGGTGCAGACACTTCGTATAAATGAAAACTTTGAGTTTAATTTCCAAACAAATATTTTTGGATCTACACTCTTCTTCTGCGGGTTTAAATGGTCGAATGAATTTCGTTGGTTCGATATTTTCACAGATAAGAGGGATGATTGCAGCAGTTGCTATTGGACTATAATTGAACTTGGACCTTGCTTGTATGGTATTGACGGTCTCTGCTATCAGTGGAACAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

125

Amino Acids

14.27

Weight (kDa)

4.61

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccII CGCG 1 cut(s) 92
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 1 cut(s) 317
Alw21I GWGCWC 2 cut(s) 49, 123
Alw26I GTCTC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 49, 123
BbvI GCAGC 1 cut(s) 303
BccI CCATC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BcoDI GTCTC 1 cut(s) 353
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmsI GCATC 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 145
Bse21I CCTNAGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 2 cut(s) 46, 289
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 1 cut(s) 303
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 92
BsiHKAI GWGCWC 2 cut(s) 49, 123
BsmAI GTCTC 1 cut(s) 353
Bso31I GGTCTC 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 49, 123
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 1 cut(s) 228
BspFNI CGCG 1 cut(s) 92
BspPI GGATC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 118, 347
Bst6I CTCTTC 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 46, 289
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 2 cut(s) 132, 297
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 46, 289
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 121, 365
Cfr13I GGNCC 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
DraI TTTAAA 1 cut(s) 235
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 323
Eco81I CCTNAGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaiI YATR 4 cut(s) 26, 167, 311, 336
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 2 cut(s) 53, 296
Fsp4HI GCNGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 292
HinfI GANTC 1 cut(s) 81
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 109, 121
Hpy188I TCNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 109, 121
Hpy99I CGWCG 2 cut(s) 140, 143
HpyCH4III ACNGT 2 cut(s) 118, 347
HpyCH4IV ACGT 2 cut(s) 69, 105
HpyCH4V TGCA 4 cut(s) 121, 126, 154, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 297
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 2 cut(s) 69, 105
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 1 cut(s) 46
MaeII ACGT 2 cut(s) 69, 105
MaeIII GTNAC 1 cut(s) 93
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 2 cut(s) 211, 214
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 49, 123
MluCI AATT 4 cut(s) 15, 187, 248, 312
MluI ACGCGT 1 cut(s) 90
MnlI CCTC 1 cut(s) 273
MseI TTAA 3 cut(s) 186, 234, 373
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 132, 297
NdeII GATC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 81
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 323
PsuI RGATCY 1 cut(s) 209
PsyI GACNNNGTC 1 cut(s) 71
SaqAI TTAA 3 cut(s) 186, 234, 373
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 323
SduI GDGCHC 2 cut(s) 49, 123
SetI ASST 4 cut(s) 72, 108, 147, 328
SfaNI GCATC 1 cut(s) 46
SinI GGWCC 1 cut(s) 323
Sse9I AATT 4 cut(s) 15, 187, 248, 312
SsiI CCGC 1 cut(s) 228
SspI AATATT 1 cut(s) 202
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 118, 347
TaiI ACGT 2 cut(s) 72, 108
TaqI TCGA 2 cut(s) 242, 261
TasI AATT 4 cut(s) 15, 187, 248, 312
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 3 cut(s) 186, 234, 373
Tru9I TTAA 3 cut(s) 186, 234, 373
TscAI CASTG 2 cut(s) 128, 365
TseI GCWGC 1 cut(s) 291
TspDTI ATGAA 3 cut(s) 13, 186, 261
TspRI CASTG 2 cut(s) 128, 365
Tth111I GACNNNGTC 1 cut(s) 71
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.