Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004892

Physical Location & Seq

Genomic Coordinates Forward (+)

4162736 .. 4163242

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G058600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAACGACAAGGTCCTCTTGAACTTTGTCCTGCTTCAATCAAAAGAATTCCAAAAGAAAAAAAGAACCGTTTTCCTGCAGGAACCAAAAATGAGCCCTCCTATCAGAAATGTTGTTATGGCACTGCTAGTTGTGCTTTTAATTACAAGTACTGAGGCCGACGTTCAAATTCCTAGGACCAAAAGACTCAGAATCACCAACTCGTTGGCAAGTAAAGTGGACATGAAGGTCCACTGTAAATCCGGTGCGCATGACCTAGGGGAGCAGATAGTTCGTCCAACGGAGAGCTATGAGTTCCGTTTCAAAACAAATGTTATGGGAACCTCATTGTTTTTCTGCAGCTTTCAGTGGGGGAATGAGTTTCATTATTTCGATGTTTACAAGAACGGTAGGGACGATTGTAGCAAATGCTTTTGGACTATTGTTGAAAAAGGGCCTTGCTTGTATGGCGTTCAGGGTGTCTGCCATGAGTGGAACAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

162

Amino Acids

18.69

Weight (kDa)

9.17

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004892)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05610
malus_domestica	MD00G1101200.v1.1 MD05G1264800.v1.1 MD05G1264900.v1.1 MD13G1228100.v1.1 MD13G1228300.v1.1
prunus_persica	Prupe.1G057700_v2.0.a1 Prupe.1G057800_v2.0.a1 Prupe.1G058600_v2.0.a1 Prupe.1G058900_v2.0.a1 Prupe.1G059000_v2.0.a1 Prupe.1G059100_v2.0.a1 Prupe.1G059200_v2.0.a1 Prupe.1G059300_v2.0.a1 Prupe.1G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396861 RchiOBHm_Chr7g0215481
rosa_laevigata	RLG00000002658 RLG00000009499
rosa_roxburghii	Rroxscaffold_4G00287630 Rroxscaffold_5G00341710
rosa_rugosa	Rorug01G0238300 Rorug03G0347100 Rorug07G0154000
rosa_samantha	Rh4DG068100 Rh7AG290200 Rh7BG282200 Rh7CG310200 Rh7DG294000
rosa_wichuraiana	Rw7G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc16I	TGCGCA	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	47, 168
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	22, 38, 167, 304, 428
AluBI	AGCT	2 cut(s)	288, 342
AluI	AGCT	2 cut(s)	288, 342
AoxI	GGCC	2 cut(s)	156, 434
ApeKI	GCWGC	1 cut(s)	339
ApoI	RAATTY	2 cut(s)	47, 168
AspA2I	CCTAGG	2 cut(s)	173, 256
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	4 cut(s)	13, 177, 229, 434
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	3 cut(s)	13, 177, 229
AvrII	CCTAGG	2 cut(s)	173, 256
BanII	GRGCYC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	351
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BfaI	CTAG	3 cut(s)	128, 174, 257
BfmI	CTRYAG	2 cut(s)	77, 337
BisI	GCNGC	1 cut(s)	340
BlnI	CCTAGG	2 cut(s)	173, 256
BlsI	GCNGC	1 cut(s)	341
BmcAI	AGTACT	1 cut(s)	151
Bme18I	GGWCC	3 cut(s)	13, 177, 229
BmgT120I	GGNCC	4 cut(s)	13, 177, 229, 434
BmiI	GGNNCC	2 cut(s)	84, 322
BsaJI	CCNNGG	2 cut(s)	173, 256
BsaWI	WCCGGW	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	173, 256
BseMII	CTCAG	2 cut(s)	144, 202
BseXI	GCAGC	1 cut(s)	351
BshFI	GGCC	2 cut(s)	158, 436
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	158, 436
Bsp1286I	GDGCHC	1 cut(s)	98
BspANI	GGCC	2 cut(s)	158, 436
BspCNI	CTCAG	2 cut(s)	145, 201
BspLI	GGNNCC	2 cut(s)	84, 322
BspMAI	CTGCAG	2 cut(s)	81, 341
BssECI	CCNNGG	2 cut(s)	173, 256
BssT1I	CCWWGG	2 cut(s)	173, 256
Bst4CI	ACNGT	3 cut(s)	70, 236, 389
BstDEI	CTNAG	2 cut(s)	153, 188
BstHHI	GCGC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 447
BstSFI	CTRYAG	2 cut(s)	77, 337
BstV1I	GCAGC	1 cut(s)	351
BstXI	CCANNNNNNTGG	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	158, 436
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	122, 232, 353
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	4 cut(s)	13, 177, 229, 434
Csp6I	GTAC	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	3 cut(s)	223, 251, 467
CviJI	RGCY	5 cut(s)	96, 158, 288, 342, 436
CviKI_1	RGCY	5 cut(s)	96, 158, 288, 342, 436
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	2 cut(s)	153, 188
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	173, 256
Eco24I	GRGCYC	1 cut(s)	98
Eco47I	GGWCC	3 cut(s)	13, 177, 229
EcoO109I	RGGNCCY	2 cut(s)	13, 434
EcoRI	GAATTC	1 cut(s)	47
EcoT14I	CCWWGG	2 cut(s)	173, 256
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	2 cut(s)	173, 256
FaeI	CATG	3 cut(s)	226, 254, 470
FaiI	YATR	7 cut(s)	119, 224, 252, 291, 317, 447, 468
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	3 cut(s)	222, 250, 466
Fnu4HI	GCNGC	1 cut(s)	340
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	340
FspAI	RTGCGCAY	1 cut(s)	249
FspBI	CTAG	3 cut(s)	128, 174, 257
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	158, 436
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	3 cut(s)	226, 254, 470
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	2 cut(s)	186, 192
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	220, 232, 379
Hpy188I	TCNGA	2 cut(s)	107, 191
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	3 cut(s)	220, 232, 379
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	3 cut(s)	70, 236, 389
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	79, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 447
HpyF3I	CTNAG	2 cut(s)	153, 188
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	226, 254, 470
HspAI	GCGC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	44, 65, 89, 256, 440
Lsp1109I	GCAGC	1 cut(s)	351
MaeI	CTAG	3 cut(s)	128, 174, 257
MaeII	ACGT	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	4 cut(s)	47, 141, 168, 481
MlyI	GAGTC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	26, 108, 148, 334
MseI	TTAA	1 cut(s)	140
MspI	CCGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	133, 447
NlaIII	CATG	3 cut(s)	226, 254, 470
NlaIV	GGNNCC	2 cut(s)	84, 322
NsbI	TGCGCA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PpuMI	RGGWCCY	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	84, 322
PspPI	GGNCC	4 cut(s)	13, 177, 229, 434
PspPPI	RGGWCCY	1 cut(s)	13
PstI	CTGCAG	2 cut(s)	81, 341
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	340
Sau96I	GGNCC	4 cut(s)	13, 177, 229, 434
SbfI	CCTGCAGG	1 cut(s)	81
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	1 cut(s)	180
SdaI	CCTGCAGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	7 cut(s)	15, 165, 231, 258, 290, 326, 344
SfcI	CTRYAG	2 cut(s)	77, 337
SinI	GGWCC	3 cut(s)	13, 177, 229
Sse8387I	CCTGCAGG	1 cut(s)	81
Sse9I	AATT	4 cut(s)	47, 141, 168, 481
SspMI	CTAG	3 cut(s)	128, 174, 257
StyI	CCWWGG	2 cut(s)	173, 256
TaaI	ACNGT	3 cut(s)	70, 236, 389
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	372
TasI	AATT	4 cut(s)	47, 141, 168, 481
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	3 cut(s)	129, 239, 353
TseI	GCWGC	1 cut(s)	339
TspDTI	ATGAA	3 cut(s)	17, 239, 353
TspGWI	ACGGA	2 cut(s)	287, 296
TspRI	CASTG	3 cut(s)	129, 239, 353
Tth111I	GACNNNGTC	1 cut(s)	11
VpaK11BI	GGWCC	3 cut(s)	13, 177, 229
XapI	RAATTY	2 cut(s)	47, 168
XmaJI	CCTAGG	2 cut(s)	173, 256
XspI	CTAG	3 cut(s)	128, 174, 257
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.